Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4210

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotidesEX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotidesEX28DRAFT_4210 and EX28DRAFT_4211 overlap by 1 nucleotidesEX28DRAFT_4211 and EX28DRAFT_4212 overlap by 8 nucleotidesEX28DRAFT_4212 and EX28DRAFT_4213 are separated by 9 nucleotides EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310 _4208 EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000 _4209 EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133 _4210 EX28DRAFT_4211: EX28DRAFT_4211 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 18,133 to 18,681 _4211 EX28DRAFT_4212: EX28DRAFT_4212 - Acetyltransferase (GNAT) family, at 18,674 to 19,108 _4212 EX28DRAFT_4213: EX28DRAFT_4213 - phosphonate metabolism protein PhnP, at 19,118 to 19,876 _4213 Position (kb) 16 17 18 19Strain fitness (log2 ratio) -1 0 1at 16.055 kb on + strand, within EX28DRAFT_4208at 16.309 kb on - strandat 16.309 kb on - strandat 16.331 kb on - strandat 16.331 kb on - strandat 16.339 kb on + strandat 16.340 kb on - strandat 16.340 kb on - strandat 16.343 kb on + strandat 16.344 kb on - strandat 16.344 kb on - strandat 16.394 kb on + strand, within EX28DRAFT_4209at 16.395 kb on - strand, within EX28DRAFT_4209at 16.491 kb on + strand, within EX28DRAFT_4209at 16.492 kb on - strand, within EX28DRAFT_4209at 16.492 kb on - strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.566 kb on - strand, within EX28DRAFT_4209at 16.831 kb on + strand, within EX28DRAFT_4209at 16.951 kb on + strandat 17.101 kb on + strandat 17.529 kb on - strand, within EX28DRAFT_4210at 17.529 kb on - strand, within EX28DRAFT_4210at 17.538 kb on - strand, within EX28DRAFT_4210at 17.552 kb on + strand, within EX28DRAFT_4210at 17.627 kb on - strand, within EX28DRAFT_4210at 17.706 kb on + strand, within EX28DRAFT_4210at 17.962 kb on + strand, within EX28DRAFT_4210at 17.962 kb on + strand, within EX28DRAFT_4210at 18.013 kb on + strand, within EX28DRAFT_4210at 18.238 kb on + strand, within EX28DRAFT_4211at 18.239 kb on - strand, within EX28DRAFT_4211at 18.239 kb on - strand, within EX28DRAFT_4211at 18.242 kb on + strand, within EX28DRAFT_4211at 18.356 kb on - strand, within EX28DRAFT_4211at 18.455 kb on - strand, within EX28DRAFT_4211at 18.623 kb on + strand, within EX28DRAFT_4211at 18.623 kb on + strand, within EX28DRAFT_4211at 18.636 kb on + strandat 18.726 kb on - strand, within EX28DRAFT_4212at 19.071 kb on - strandat 19.106 kb on + strandat 19.118 kb on - strandat 19.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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16,055 + EX28DRAFT_4208 0.66 +0.2
16,309 - -0.1
16,309 - -0.1
16,331 - +0.6
16,331 - +0.6
16,339 + -0.2
16,340 - +0.2
16,340 - -1.2
16,343 + -0.1
16,344 - -0.0
16,344 - +0.1
16,394 + EX28DRAFT_4209 0.11 -0.7
16,395 - EX28DRAFT_4209 0.11 +0.1
16,491 + EX28DRAFT_4209 0.25 +0.2
16,492 - EX28DRAFT_4209 0.25 -0.3
16,492 - EX28DRAFT_4209 0.25 +0.8
16,565 + EX28DRAFT_4209 0.36 -0.3
16,565 + EX28DRAFT_4209 0.36 +0.7
16,565 + EX28DRAFT_4209 0.36 +0.4
16,565 + EX28DRAFT_4209 0.36 +0.5
16,566 - EX28DRAFT_4209 0.36 -0.4
16,831 + EX28DRAFT_4209 0.75 -0.4
16,951 + +0.2
17,101 + -0.4
17,529 - EX28DRAFT_4210 0.47 +0.1
17,529 - EX28DRAFT_4210 0.47 +0.3
17,538 - EX28DRAFT_4210 0.48 +0.2
17,552 + EX28DRAFT_4210 0.49 +0.1
17,627 - EX28DRAFT_4210 0.55 -0.3
17,706 + EX28DRAFT_4210 0.62 -0.4
17,962 + EX28DRAFT_4210 0.85 +0.2
17,962 + EX28DRAFT_4210 0.85 +0.3
18,013 + EX28DRAFT_4210 0.89 -0.2
18,238 + EX28DRAFT_4211 0.19 +0.1
18,239 - EX28DRAFT_4211 0.19 -0.1
18,239 - EX28DRAFT_4211 0.19 -0.4
18,242 + EX28DRAFT_4211 0.20 -0.4
18,356 - EX28DRAFT_4211 0.41 -0.4
18,455 - EX28DRAFT_4211 0.59 -0.1
18,623 + EX28DRAFT_4211 0.89 +0.1
18,623 + EX28DRAFT_4211 0.89 +0.2
18,636 + +0.4
18,726 - EX28DRAFT_4212 0.12 -0.8
19,071 - -0.0
19,106 + +0.3
19,118 - -0.3
19,118 - +0.3

Or see this region's nucleotide sequence