Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4125

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4124 and EX28DRAFT_4125 are separated by 585 nucleotidesEX28DRAFT_4125 and EX28DRAFT_4126 are separated by 9 nucleotides EX28DRAFT_4124: EX28DRAFT_4124 - ATP-dependent transcriptional regulator, at 99,369 to 102,074 _4124 EX28DRAFT_4125: EX28DRAFT_4125 - glycogen/starch/alpha-glucan phosphorylases, at 102,660 to 105,053 _4125 EX28DRAFT_4126: EX28DRAFT_4126 - 4-alpha-glucanotransferase, at 105,063 to 107,141 _4126 Position (kb) 102 103 104 105 106Strain fitness (log2 ratio) -1 0 1at 101.687 kb on - strand, within EX28DRAFT_4124at 101.704 kb on + strand, within EX28DRAFT_4124at 101.705 kb on - strand, within EX28DRAFT_4124at 101.830 kb on - strandat 101.845 kb on + strandat 101.846 kb on - strandat 101.846 kb on - strandat 101.984 kb on + strandat 101.985 kb on - strandat 102.029 kb on + strandat 102.029 kb on + strandat 102.030 kb on - strandat 102.030 kb on - strandat 102.074 kb on + strandat 102.074 kb on + strandat 102.074 kb on + strandat 102.075 kb on - strandat 102.139 kb on - strandat 102.140 kb on + strandat 102.140 kb on + strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.162 kb on + strandat 102.162 kb on + strandat 102.162 kb on + strandat 102.163 kb on - strandat 102.320 kb on + strandat 102.320 kb on + strandat 102.321 kb on - strandat 102.321 kb on - strandat 102.365 kb on + strandat 102.368 kb on + strandat 102.368 kb on + strandat 102.368 kb on + strandat 102.491 kb on - strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.543 kb on + strandat 102.617 kb on + strandat 102.672 kb on - strandat 102.824 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.913 kb on - strand, within EX28DRAFT_4125at 102.950 kb on + strand, within EX28DRAFT_4125at 102.950 kb on + strand, within EX28DRAFT_4125at 102.951 kb on - strand, within EX28DRAFT_4125at 103.037 kb on + strand, within EX28DRAFT_4125at 103.080 kb on + strand, within EX28DRAFT_4125at 103.086 kb on + strand, within EX28DRAFT_4125at 103.154 kb on + strand, within EX28DRAFT_4125at 103.159 kb on - strand, within EX28DRAFT_4125at 103.479 kb on + strand, within EX28DRAFT_4125at 103.480 kb on - strand, within EX28DRAFT_4125at 103.480 kb on - strand, within EX28DRAFT_4125at 103.686 kb on + strand, within EX28DRAFT_4125at 103.796 kb on + strand, within EX28DRAFT_4125at 103.796 kb on + strand, within EX28DRAFT_4125at 104.069 kb on + strand, within EX28DRAFT_4125at 104.316 kb on + strand, within EX28DRAFT_4125at 104.397 kb on + strand, within EX28DRAFT_4125at 104.429 kb on + strand, within EX28DRAFT_4125at 104.678 kb on + strand, within EX28DRAFT_4125at 104.678 kb on + strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.733 kb on + strand, within EX28DRAFT_4125at 104.805 kb on + strand, within EX28DRAFT_4125at 104.905 kb on + strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.935 kb on - strandat 105.033 kb on - strandat 105.121 kb on + strandat 105.121 kb on + strandat 105.122 kb on - strandat 105.146 kb on + strandat 105.454 kb on - strand, within EX28DRAFT_4126at 105.510 kb on + strand, within EX28DRAFT_4126at 105.510 kb on + strand, within EX28DRAFT_4126at 105.511 kb on - strand, within EX28DRAFT_4126at 105.531 kb on - strand, within EX28DRAFT_4126at 105.531 kb on - strand, within EX28DRAFT_4126at 105.660 kb on + strand, within EX28DRAFT_4126at 105.697 kb on - strand, within EX28DRAFT_4126at 105.716 kb on - strand, within EX28DRAFT_4126at 105.936 kb on + strand, within EX28DRAFT_4126at 105.970 kb on - strand, within EX28DRAFT_4126

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
101,687 - EX28DRAFT_4124 0.86 +0.5
101,704 + EX28DRAFT_4124 0.86 +0.2
101,705 - EX28DRAFT_4124 0.86 -0.2
101,830 - -0.4
101,845 + -0.2
101,846 - -0.2
101,846 - +0.0
101,984 + +0.1
101,985 - +0.3
102,029 + +0.0
102,029 + -0.0
102,030 - -0.1
102,030 - -0.1
102,074 + +0.3
102,074 + +0.1
102,074 + +0.5
102,075 - +0.8
102,139 - +0.2
102,140 + +0.2
102,140 + -0.4
102,141 - +0.2
102,141 - +0.1
102,141 - -0.8
102,141 - +0.6
102,141 - +0.3
102,141 - +0.4
102,162 + -0.7
102,162 + -0.4
102,162 + +1.3
102,163 - +1.1
102,320 + +0.2
102,320 + -0.6
102,321 - +0.4
102,321 - +0.8
102,365 + +0.2
102,368 + -0.4
102,368 + -0.1
102,368 + +0.2
102,491 - -0.0
102,512 + +0.3
102,512 + -0.1
102,512 + +0.2
102,512 + -0.8
102,543 + -0.4
102,617 + -0.0
102,672 - +0.7
102,824 + -0.0
102,849 + -0.5
102,849 + +0.1
102,849 + +1.2
102,849 + +0.5
102,849 + -0.2
102,849 + -0.4
102,849 + +0.2
102,850 - +0.1
102,850 - +0.4
102,850 - -0.3
102,850 - -0.2
102,913 - EX28DRAFT_4125 0.11 +0.4
102,950 + EX28DRAFT_4125 0.12 +1.7
102,950 + EX28DRAFT_4125 0.12 -0.5
102,951 - EX28DRAFT_4125 0.12 -0.2
103,037 + EX28DRAFT_4125 0.16 -0.2
103,080 + EX28DRAFT_4125 0.18 -0.3
103,086 + EX28DRAFT_4125 0.18 +0.3
103,154 + EX28DRAFT_4125 0.21 -1.0
103,159 - EX28DRAFT_4125 0.21 +1.0
103,479 + EX28DRAFT_4125 0.34 -0.1
103,480 - EX28DRAFT_4125 0.34 -1.4
103,480 - EX28DRAFT_4125 0.34 -0.2
103,686 + EX28DRAFT_4125 0.43 +0.2
103,796 + EX28DRAFT_4125 0.47 -0.1
103,796 + EX28DRAFT_4125 0.47 -0.5
104,069 + EX28DRAFT_4125 0.59 +0.2
104,316 + EX28DRAFT_4125 0.69 +0.0
104,397 + EX28DRAFT_4125 0.73 +0.1
104,429 + EX28DRAFT_4125 0.74 -0.1
104,678 + EX28DRAFT_4125 0.84 -0.0
104,678 + EX28DRAFT_4125 0.84 -0.0
104,679 - EX28DRAFT_4125 0.84 -0.2
104,679 - EX28DRAFT_4125 0.84 +0.4
104,679 - EX28DRAFT_4125 0.84 -0.7
104,733 + EX28DRAFT_4125 0.87 -0.6
104,805 + EX28DRAFT_4125 0.90 -0.1
104,905 + +0.4
104,906 - +0.4
104,906 - +0.5
104,906 - -0.2
104,906 - -0.1
104,935 - -0.1
105,033 - -0.2
105,121 + +0.9
105,121 + -0.1
105,122 - +1.6
105,146 + +0.7
105,454 - EX28DRAFT_4126 0.19 +0.3
105,510 + EX28DRAFT_4126 0.22 -0.1
105,510 + EX28DRAFT_4126 0.22 +0.4
105,511 - EX28DRAFT_4126 0.22 -0.0
105,531 - EX28DRAFT_4126 0.23 +0.0
105,531 - EX28DRAFT_4126 0.23 +0.1
105,660 + EX28DRAFT_4126 0.29 +0.1
105,697 - EX28DRAFT_4126 0.30 +0.7
105,716 - EX28DRAFT_4126 0.31 -0.1
105,936 + EX28DRAFT_4126 0.42 +0.1
105,970 - EX28DRAFT_4126 0.44 +0.4

Or see this region's nucleotide sequence