Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3570

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3568 and EX28DRAFT_3569 overlap by 55 nucleotidesEX28DRAFT_3569 and EX28DRAFT_3570 are separated by 38 nucleotidesEX28DRAFT_3570 and EX28DRAFT_3571 are separated by 328 nucleotides EX28DRAFT_3568: EX28DRAFT_3568 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 230,443 to 231,180 _3568 EX28DRAFT_3569: EX28DRAFT_3569 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 231,126 to 231,812 _3569 EX28DRAFT_3570: EX28DRAFT_3570 - Uncharacterized conserved protein, at 231,851 to 232,309 _3570 EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984 _3571 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.924 kb on + strand, within EX28DRAFT_3568at 230.936 kb on + strand, within EX28DRAFT_3568at 230.936 kb on + strand, within EX28DRAFT_3568at 230.937 kb on - strand, within EX28DRAFT_3568at 230.940 kb on + strand, within EX28DRAFT_3568at 230.941 kb on - strand, within EX28DRAFT_3568at 230.988 kb on + strand, within EX28DRAFT_3568at 230.988 kb on + strand, within EX28DRAFT_3568at 231.043 kb on - strand, within EX28DRAFT_3568at 231.055 kb on + strand, within EX28DRAFT_3568at 231.055 kb on + strand, within EX28DRAFT_3568at 231.056 kb on - strand, within EX28DRAFT_3568at 231.073 kb on - strand, within EX28DRAFT_3568at 231.073 kb on - strand, within EX28DRAFT_3568at 231.109 kb on + strandat 231.152 kb on + strandat 231.152 kb on + strandat 231.153 kb on - strandat 231.257 kb on + strand, within EX28DRAFT_3569at 231.258 kb on - strand, within EX28DRAFT_3569at 231.263 kb on + strand, within EX28DRAFT_3569at 231.303 kb on + strand, within EX28DRAFT_3569at 231.303 kb on + strand, within EX28DRAFT_3569at 231.304 kb on - strand, within EX28DRAFT_3569at 231.304 kb on - strand, within EX28DRAFT_3569at 231.304 kb on - strand, within EX28DRAFT_3569at 231.304 kb on - strand, within EX28DRAFT_3569at 231.392 kb on + strand, within EX28DRAFT_3569at 231.425 kb on - strand, within EX28DRAFT_3569at 231.543 kb on - strand, within EX28DRAFT_3569at 231.543 kb on - strand, within EX28DRAFT_3569at 231.543 kb on - strand, within EX28DRAFT_3569at 231.609 kb on + strand, within EX28DRAFT_3569at 231.609 kb on + strand, within EX28DRAFT_3569at 231.609 kb on + strand, within EX28DRAFT_3569at 231.611 kb on + strand, within EX28DRAFT_3569at 231.611 kb on + strand, within EX28DRAFT_3569at 231.612 kb on - strand, within EX28DRAFT_3569at 231.612 kb on - strand, within EX28DRAFT_3569at 231.612 kb on - strand, within EX28DRAFT_3569at 231.612 kb on - strand, within EX28DRAFT_3569at 231.612 kb on - strand, within EX28DRAFT_3569at 231.665 kb on + strand, within EX28DRAFT_3569at 231.665 kb on + strand, within EX28DRAFT_3569at 231.665 kb on + strand, within EX28DRAFT_3569at 231.666 kb on - strand, within EX28DRAFT_3569at 231.684 kb on - strand, within EX28DRAFT_3569at 231.725 kb on - strand, within EX28DRAFT_3569at 231.749 kb on + strandat 231.749 kb on + strandat 231.749 kb on + strandat 231.750 kb on - strandat 231.794 kb on + strandat 231.795 kb on - strandat 231.808 kb on + strandat 231.808 kb on + strandat 231.910 kb on + strand, within EX28DRAFT_3570at 231.910 kb on + strand, within EX28DRAFT_3570at 232.016 kb on + strand, within EX28DRAFT_3570at 232.017 kb on - strand, within EX28DRAFT_3570at 232.235 kb on - strand, within EX28DRAFT_3570at 232.259 kb on + strand, within EX28DRAFT_3570at 232.261 kb on + strand, within EX28DRAFT_3570at 232.293 kb on - strandat 232.328 kb on - strandat 232.328 kb on - strandat 232.364 kb on - strandat 232.367 kb on + strandat 232.386 kb on - strandat 232.469 kb on + strandat 232.472 kb on + strandat 232.479 kb on + strandat 232.479 kb on + strandat 232.480 kb on - strandat 232.483 kb on + strandat 232.484 kb on - strandat 232.496 kb on - strandat 232.505 kb on + strandat 232.506 kb on - strandat 232.506 kb on - strandat 232.506 kb on - strandat 232.517 kb on - strandat 232.580 kb on + strandat 232.580 kb on + strandat 232.690 kb on - strandat 232.754 kb on + strandat 232.754 kb on + strandat 232.755 kb on - strandat 232.773 kb on - strand, within EX28DRAFT_3571at 232.773 kb on - strand, within EX28DRAFT_3571at 232.902 kb on - strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.926 kb on + strand, within EX28DRAFT_3571at 232.927 kb on - strand, within EX28DRAFT_3571at 232.928 kb on + strand, within EX28DRAFT_3571at 232.928 kb on + strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.947 kb on + strand, within EX28DRAFT_3571at 232.959 kb on - strand, within EX28DRAFT_3571at 232.965 kb on + strand, within EX28DRAFT_3571at 232.965 kb on + strand, within EX28DRAFT_3571at 232.966 kb on - strand, within EX28DRAFT_3571at 232.995 kb on - strand, within EX28DRAFT_3571at 233.151 kb on - strand, within EX28DRAFT_3571at 233.300 kb on + strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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230,924 + EX28DRAFT_3568 0.65 -1.8
230,936 + EX28DRAFT_3568 0.67 -0.5
230,936 + EX28DRAFT_3568 0.67 +0.0
230,937 - EX28DRAFT_3568 0.67 +0.3
230,940 + EX28DRAFT_3568 0.67 +0.1
230,941 - EX28DRAFT_3568 0.67 +0.3
230,988 + EX28DRAFT_3568 0.74 -0.2
230,988 + EX28DRAFT_3568 0.74 +0.5
231,043 - EX28DRAFT_3568 0.81 +1.5
231,055 + EX28DRAFT_3568 0.83 -0.1
231,055 + EX28DRAFT_3568 0.83 +0.0
231,056 - EX28DRAFT_3568 0.83 +0.1
231,073 - EX28DRAFT_3568 0.85 +0.4
231,073 - EX28DRAFT_3568 0.85 -0.7
231,109 + -0.4
231,152 + +2.1
231,152 + -0.6
231,153 - +0.5
231,257 + EX28DRAFT_3569 0.19 +0.9
231,258 - EX28DRAFT_3569 0.19 -1.7
231,263 + EX28DRAFT_3569 0.20 -0.1
231,303 + EX28DRAFT_3569 0.26 -2.5
231,303 + EX28DRAFT_3569 0.26 +0.2
231,304 - EX28DRAFT_3569 0.26 +0.3
231,304 - EX28DRAFT_3569 0.26 +0.1
231,304 - EX28DRAFT_3569 0.26 -0.1
231,304 - EX28DRAFT_3569 0.26 +0.3
231,392 + EX28DRAFT_3569 0.39 -0.0
231,425 - EX28DRAFT_3569 0.44 +0.7
231,543 - EX28DRAFT_3569 0.61 -0.3
231,543 - EX28DRAFT_3569 0.61 -0.1
231,543 - EX28DRAFT_3569 0.61 -0.4
231,609 + EX28DRAFT_3569 0.70 -0.2
231,609 + EX28DRAFT_3569 0.70 -0.1
231,609 + EX28DRAFT_3569 0.70 -0.3
231,611 + EX28DRAFT_3569 0.71 -0.2
231,611 + EX28DRAFT_3569 0.71 -0.0
231,612 - EX28DRAFT_3569 0.71 -1.0
231,612 - EX28DRAFT_3569 0.71 -0.4
231,612 - EX28DRAFT_3569 0.71 +0.2
231,612 - EX28DRAFT_3569 0.71 -0.8
231,612 - EX28DRAFT_3569 0.71 +0.1
231,665 + EX28DRAFT_3569 0.78 +0.1
231,665 + EX28DRAFT_3569 0.78 -0.0
231,665 + EX28DRAFT_3569 0.78 -0.0
231,666 - EX28DRAFT_3569 0.79 +0.6
231,684 - EX28DRAFT_3569 0.81 -0.1
231,725 - EX28DRAFT_3569 0.87 -0.3
231,749 + -1.8
231,749 + -0.6
231,749 + +0.2
231,750 - +0.2
231,794 + +0.2
231,795 - -0.3
231,808 + +0.3
231,808 + -0.0
231,910 + EX28DRAFT_3570 0.13 -0.5
231,910 + EX28DRAFT_3570 0.13 +0.3
232,016 + EX28DRAFT_3570 0.36 +0.1
232,017 - EX28DRAFT_3570 0.36 -0.1
232,235 - EX28DRAFT_3570 0.84 -0.4
232,259 + EX28DRAFT_3570 0.89 -0.5
232,261 + EX28DRAFT_3570 0.89 -1.1
232,293 - +0.1
232,328 - -0.6
232,328 - -0.1
232,364 - -0.3
232,367 + +1.2
232,386 - -0.4
232,469 + +0.4
232,472 + -0.1
232,479 + -0.9
232,479 + +0.4
232,480 - +0.5
232,483 + -0.3
232,484 - -0.2
232,496 - -0.8
232,505 + +0.2
232,506 - -0.2
232,506 - +0.2
232,506 - +0.2
232,517 - +0.6
232,580 + +0.7
232,580 + +0.4
232,690 - -0.0
232,754 + -1.1
232,754 + +0.0
232,755 - -0.2
232,773 - EX28DRAFT_3571 0.10 -0.5
232,773 - EX28DRAFT_3571 0.10 +0.1
232,902 - EX28DRAFT_3571 0.20 -0.1
232,916 + EX28DRAFT_3571 0.21 -0.5
232,916 + EX28DRAFT_3571 0.21 +0.4
232,916 + EX28DRAFT_3571 0.21 -0.1
232,917 - EX28DRAFT_3571 0.21 +0.3
232,917 - EX28DRAFT_3571 0.21 +0.7
232,917 - EX28DRAFT_3571 0.21 -1.2
232,926 + EX28DRAFT_3571 0.21 +0.5
232,927 - EX28DRAFT_3571 0.21 -0.5
232,928 + EX28DRAFT_3571 0.22 -0.3
232,928 + EX28DRAFT_3571 0.22 +1.3
232,929 - EX28DRAFT_3571 0.22 -0.3
232,929 - EX28DRAFT_3571 0.22 -0.3
232,929 - EX28DRAFT_3571 0.22 -0.3
232,947 + EX28DRAFT_3571 0.23 -0.4
232,959 - EX28DRAFT_3571 0.24 +1.8
232,965 + EX28DRAFT_3571 0.24 +0.2
232,965 + EX28DRAFT_3571 0.24 -0.2
232,966 - EX28DRAFT_3571 0.24 +0.2
232,995 - EX28DRAFT_3571 0.27 -0.6
233,151 - EX28DRAFT_3571 0.38 -0.3
233,300 + EX28DRAFT_3571 0.49 +0.8
233,301 - EX28DRAFT_3571 0.49 -0.2
233,301 - EX28DRAFT_3571 0.49 +0.6
233,301 - EX28DRAFT_3571 0.49 +0.4

Or see this region's nucleotide sequence