Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3194 and EX28DRAFT_3195 are separated by 67 nucleotides EX28DRAFT_3195 and EX28DRAFT_3196 are separated by 62 nucleotides EX28DRAFT_3196 and EX28DRAFT_3197 overlap by 43 nucleotides EX28DRAFT_3197 and EX28DRAFT_3198 are separated by 21 nucleotides EX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotides
EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332
_3194
EX28DRAFT_3195: EX28DRAFT_3195 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 496,400 to 497,263
_3195
EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488
_3196
EX28DRAFT_3197: EX28DRAFT_3197 - TIGR00252 family protein, at 499,446 to 499,841
_3197
EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453
_3198
EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038
_3199
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -1
0
1 at 496.326 kb on + strand at 496.326 kb on + strand at 496.342 kb on - strand at 496.425 kb on + strand at 496.429 kb on + strand at 496.429 kb on + strand at 496.430 kb on - strand at 496.430 kb on - strand at 496.430 kb on - strand at 496.431 kb on + strand at 496.432 kb on - strand at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.721 kb on - strand, within EX28DRAFT_3195 at 496.721 kb on - strand, within EX28DRAFT_3195 at 496.796 kb on + strand, within EX28DRAFT_3195 at 496.796 kb on + strand, within EX28DRAFT_3195 at 496.942 kb on + strand, within EX28DRAFT_3195 at 496.942 kb on + strand, within EX28DRAFT_3195 at 496.943 kb on - strand, within EX28DRAFT_3195 at 497.213 kb on + strand at 497.213 kb on + strand at 497.220 kb on + strand at 497.220 kb on + strand at 497.220 kb on + strand at 497.221 kb on - strand at 497.240 kb on - strand at 497.276 kb on - strand at 497.286 kb on + strand at 497.331 kb on - strand at 497.473 kb on + strand at 497.650 kb on - strand, within EX28DRAFT_3196 at 497.668 kb on + strand, within EX28DRAFT_3196 at 497.989 kb on - strand, within EX28DRAFT_3196 at 498.309 kb on + strand, within EX28DRAFT_3196 at 498.310 kb on - strand, within EX28DRAFT_3196 at 498.536 kb on - strand, within EX28DRAFT_3196 at 498.763 kb on - strand, within EX28DRAFT_3196 at 498.921 kb on - strand, within EX28DRAFT_3196 at 499.066 kb on + strand, within EX28DRAFT_3196 at 499.284 kb on - strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.442 kb on + strand at 499.442 kb on + strand at 499.443 kb on - strand at 499.457 kb on - strand at 499.486 kb on + strand at 499.508 kb on + strand, within EX28DRAFT_3197 at 499.633 kb on + strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.742 kb on + strand, within EX28DRAFT_3197 at 499.757 kb on + strand, within EX28DRAFT_3197 at 499.815 kb on - strand at 499.839 kb on + strand at 499.840 kb on - strand at 499.840 kb on - strand at 499.850 kb on + strand at 499.851 kb on - strand at 499.878 kb on - strand at 500.099 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.452 kb on - strand at 500.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 496,326 + +0.8 496,326 + -0.3 496,342 - +0.9 496,425 + -0.2 496,429 + +0.6 496,429 + -0.1 496,430 - +0.4 496,430 - -0.8 496,430 - +0.2 496,431 + -0.0 496,432 - -0.3 496,558 + EX28DRAFT_3195 0.18 +0.3 496,558 + EX28DRAFT_3195 0.18 -0.2 496,558 + EX28DRAFT_3195 0.18 -0.1 496,721 - EX28DRAFT_3195 0.37 -0.1 496,721 - EX28DRAFT_3195 0.37 -0.2 496,796 + EX28DRAFT_3195 0.46 +0.5 496,796 + EX28DRAFT_3195 0.46 -0.1 496,942 + EX28DRAFT_3195 0.63 -0.7 496,942 + EX28DRAFT_3195 0.63 +1.0 496,943 - EX28DRAFT_3195 0.63 -1.0 497,213 + -0.5 497,213 + +0.2 497,220 + -0.1 497,220 + -0.7 497,220 + -0.0 497,221 - +0.1 497,240 - +0.4 497,276 - +1.1 497,286 + -0.4 497,331 - -0.2 497,473 + +0.6 497,650 - EX28DRAFT_3196 0.15 +0.7 497,668 + EX28DRAFT_3196 0.16 -0.6 497,989 - EX28DRAFT_3196 0.31 +0.1 498,309 + EX28DRAFT_3196 0.45 -0.8 498,310 - EX28DRAFT_3196 0.45 +0.0 498,536 - EX28DRAFT_3196 0.56 -1.0 498,763 - EX28DRAFT_3196 0.66 -0.3 498,921 - EX28DRAFT_3196 0.74 -0.3 499,066 + EX28DRAFT_3196 0.80 -0.4 499,284 - -0.6 499,284 - +0.0 499,284 - +0.4 499,442 + -0.8 499,442 + -0.3 499,443 - +0.0 499,457 - -0.2 499,486 + +0.4 499,508 + EX28DRAFT_3197 0.16 -0.2 499,633 + EX28DRAFT_3197 0.47 +0.0 499,704 - EX28DRAFT_3197 0.65 +0.3 499,704 - EX28DRAFT_3197 0.65 +0.1 499,704 - EX28DRAFT_3197 0.65 +0.3 499,742 + EX28DRAFT_3197 0.75 +0.6 499,757 + EX28DRAFT_3197 0.79 -0.2 499,815 - -0.3 499,839 + +0.1 499,840 - -0.5 499,840 - +0.2 499,850 + -0.2 499,851 - -0.3 499,878 - +0.5 500,099 + EX28DRAFT_3198 0.40 +0.4 500,387 + EX28DRAFT_3198 0.89 -0.2 500,387 + EX28DRAFT_3198 0.89 -0.2 500,387 + EX28DRAFT_3198 0.89 -0.1 500,387 + EX28DRAFT_3198 0.89 -0.0 500,387 + EX28DRAFT_3198 0.89 +0.6 500,387 + EX28DRAFT_3198 0.89 +0.2 500,388 - EX28DRAFT_3198 0.89 -0.6 500,388 - EX28DRAFT_3198 0.89 +1.2 500,452 - -0.1 500,462 + -0.4
Or see this region's nucleotide sequence