Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3113

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3111 and EX28DRAFT_3112 are separated by 58 nucleotidesEX28DRAFT_3112 and EX28DRAFT_3113 are separated by 50 nucleotidesEX28DRAFT_3113 and EX28DRAFT_3114 are separated by 110 nucleotidesEX28DRAFT_3114 and EX28DRAFT_3115 overlap by 17 nucleotides EX28DRAFT_3111: EX28DRAFT_3111 - Phage tail sheath protein FI, at 419,974 to 421,161 _3111 EX28DRAFT_3112: EX28DRAFT_3112 - Site-specific recombinases, DNA invertase Pin homologs, at 421,220 to 421,813 _3112 EX28DRAFT_3113: EX28DRAFT_3113 - hypothetical protein, at 421,864 to 422,145 _3113 EX28DRAFT_3114: EX28DRAFT_3114 - Caudovirales tail fibre assembly protein, at 422,256 to 422,651 _3114 EX28DRAFT_3115: EX28DRAFT_3115 - Caudovirales tail fibre assembly protein, at 422,635 to 423,231 _3115 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 421.167 kb on + strandat 421.193 kb on + strandat 421.193 kb on + strandat 421.214 kb on + strandat 421.214 kb on + strandat 421.221 kb on + strandat 421.265 kb on + strandat 421.265 kb on + strandat 421.266 kb on - strandat 421.301 kb on - strand, within EX28DRAFT_3112at 421.495 kb on + strand, within EX28DRAFT_3112at 421.561 kb on + strand, within EX28DRAFT_3112at 421.606 kb on + strand, within EX28DRAFT_3112at 421.634 kb on + strand, within EX28DRAFT_3112at 421.635 kb on - strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.646 kb on - strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.658 kb on - strand, within EX28DRAFT_3112at 421.678 kb on + strand, within EX28DRAFT_3112at 421.679 kb on - strand, within EX28DRAFT_3112at 421.703 kb on - strand, within EX28DRAFT_3112at 421.714 kb on + strand, within EX28DRAFT_3112at 421.715 kb on - strand, within EX28DRAFT_3112at 421.764 kb on - strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.801 kb on - strandat 421.801 kb on - strandat 421.808 kb on - strandat 421.817 kb on - strandat 421.851 kb on + strandat 421.851 kb on + strandat 421.986 kb on - strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.036 kb on - strand, within EX28DRAFT_3113at 422.037 kb on + strand, within EX28DRAFT_3113at 422.038 kb on - strand, within EX28DRAFT_3113at 422.044 kb on - strand, within EX28DRAFT_3113at 422.097 kb on + strand, within EX28DRAFT_3113at 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.243 kb on + strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.302 kb on + strand, within EX28DRAFT_3114at 422.302 kb on + strand, within EX28DRAFT_3114at 422.303 kb on - strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.313 kb on - strand, within EX28DRAFT_3114at 422.337 kb on - strand, within EX28DRAFT_3114at 422.347 kb on + strand, within EX28DRAFT_3114at 422.493 kb on - strand, within EX28DRAFT_3114at 422.560 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.579 kb on + strand, within EX28DRAFT_3114at 422.604 kb on - strand, within EX28DRAFT_3114at 422.650 kb on - strandat 422.661 kb on + strandat 422.661 kb on + strandat 422.701 kb on + strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.706 kb on - strand, within EX28DRAFT_3115at 422.733 kb on + strand, within EX28DRAFT_3115at 422.755 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.762 kb on - strand, within EX28DRAFT_3115at 422.776 kb on + strand, within EX28DRAFT_3115at 422.777 kb on - strand, within EX28DRAFT_3115at 422.778 kb on + strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.806 kb on + strand, within EX28DRAFT_3115at 422.859 kb on + strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.881 kb on - strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.984 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.027 kb on + strand, within EX28DRAFT_3115at 423.028 kb on - strand, within EX28DRAFT_3115at 423.046 kb on + strand, within EX28DRAFT_3115at 423.047 kb on - strand, within EX28DRAFT_3115at 423.051 kb on + strand, within EX28DRAFT_3115at 423.143 kb on + strand, within EX28DRAFT_3115

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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421,167 + -0.2
421,193 + -0.0
421,193 + -0.3
421,214 + +0.1
421,214 + -0.0
421,221 + -0.7
421,265 + -0.5
421,265 + -0.3
421,266 - +0.1
421,301 - EX28DRAFT_3112 0.14 -0.8
421,495 + EX28DRAFT_3112 0.46 -0.1
421,561 + EX28DRAFT_3112 0.57 +0.5
421,606 + EX28DRAFT_3112 0.65 -0.0
421,634 + EX28DRAFT_3112 0.70 -0.2
421,635 - EX28DRAFT_3112 0.70 +0.1
421,645 + EX28DRAFT_3112 0.72 -0.0
421,645 + EX28DRAFT_3112 0.72 -0.1
421,645 + EX28DRAFT_3112 0.72 -0.3
421,646 - EX28DRAFT_3112 0.72 +0.2
421,657 + EX28DRAFT_3112 0.74 -0.4
421,657 + EX28DRAFT_3112 0.74 -0.2
421,657 + EX28DRAFT_3112 0.74 +0.7
421,658 - EX28DRAFT_3112 0.74 -0.4
421,678 + EX28DRAFT_3112 0.77 +0.2
421,679 - EX28DRAFT_3112 0.77 -0.5
421,703 - EX28DRAFT_3112 0.81 +0.0
421,714 + EX28DRAFT_3112 0.83 -0.9
421,715 - EX28DRAFT_3112 0.83 -0.1
421,764 - +0.6
421,796 + -0.3
421,796 + -0.3
421,796 + -0.3
421,796 + -0.2
421,796 + -1.1
421,796 + -0.7
421,797 - +0.4
421,797 - -0.2
421,797 - +0.2
421,797 - -0.5
421,797 - -0.1
421,797 - -1.6
421,801 - -0.5
421,801 - +0.5
421,808 - -0.1
421,817 - -0.2
421,851 + -0.4
421,851 + +0.2
421,986 - EX28DRAFT_3113 0.43 +0.3
422,035 + EX28DRAFT_3113 0.61 -0.1
422,035 + EX28DRAFT_3113 0.61 -0.3
422,036 - EX28DRAFT_3113 0.61 -0.6
422,037 + EX28DRAFT_3113 0.61 +0.3
422,038 - EX28DRAFT_3113 0.62 -0.1
422,044 - EX28DRAFT_3113 0.64 -0.8
422,097 + EX28DRAFT_3113 0.83 -0.0
422,167 + +0.1
422,167 + -0.3
422,167 + -0.4
422,167 + -0.5
422,167 + +0.5
422,168 - -0.2
422,168 - +0.1
422,168 - -0.7
422,243 + -0.5
422,244 - -1.2
422,244 - +1.8
422,244 - -0.3
422,245 + -0.2
422,245 + +1.3
422,245 + -2.4
422,245 + -0.9
422,245 + -0.1
422,245 + -0.1
422,246 - -0.4
422,246 - -0.4
422,246 - +0.1
422,246 - +0.1
422,246 - -0.6
422,246 - +0.3
422,302 + EX28DRAFT_3114 0.12 +0.6
422,302 + EX28DRAFT_3114 0.12 +0.2
422,303 - EX28DRAFT_3114 0.12 -0.2
422,312 + EX28DRAFT_3114 0.14 +0.8
422,312 + EX28DRAFT_3114 0.14 +1.1
422,313 - EX28DRAFT_3114 0.14 +0.6
422,337 - EX28DRAFT_3114 0.20 -0.4
422,347 + EX28DRAFT_3114 0.23 +0.1
422,493 - EX28DRAFT_3114 0.60 +0.1
422,560 + EX28DRAFT_3114 0.77 +0.4
422,577 + EX28DRAFT_3114 0.81 +1.1
422,577 + EX28DRAFT_3114 0.81 -0.1
422,578 - EX28DRAFT_3114 0.81 -0.3
422,578 - EX28DRAFT_3114 0.81 -0.6
422,579 + EX28DRAFT_3114 0.82 -0.5
422,604 - EX28DRAFT_3114 0.88 -0.3
422,650 - -0.1
422,661 + +0.0
422,661 + +0.9
422,701 + EX28DRAFT_3115 0.11 +0.3
422,702 - EX28DRAFT_3115 0.11 +2.0
422,702 - EX28DRAFT_3115 0.11 +0.0
422,702 - EX28DRAFT_3115 0.11 +0.1
422,705 + EX28DRAFT_3115 0.12 -0.4
422,705 + EX28DRAFT_3115 0.12 -0.5
422,706 - EX28DRAFT_3115 0.12 +0.2
422,733 + EX28DRAFT_3115 0.16 -0.3
422,755 + EX28DRAFT_3115 0.20 +0.0
422,761 + EX28DRAFT_3115 0.21 -0.8
422,761 + EX28DRAFT_3115 0.21 +0.2
422,761 + EX28DRAFT_3115 0.21 -0.3
422,762 - EX28DRAFT_3115 0.21 -1.6
422,776 + EX28DRAFT_3115 0.24 -0.4
422,777 - EX28DRAFT_3115 0.24 -0.5
422,778 + EX28DRAFT_3115 0.24 +0.5
422,779 - EX28DRAFT_3115 0.24 -0.1
422,779 - EX28DRAFT_3115 0.24 -0.0
422,779 - EX28DRAFT_3115 0.24 -0.4
422,779 - EX28DRAFT_3115 0.24 -0.2
422,779 - EX28DRAFT_3115 0.24 +0.0
422,779 - EX28DRAFT_3115 0.24 -0.1
422,806 + EX28DRAFT_3115 0.29 +0.4
422,859 + EX28DRAFT_3115 0.38 +0.0
422,860 - EX28DRAFT_3115 0.38 -0.4
422,860 - EX28DRAFT_3115 0.38 -0.4
422,880 + EX28DRAFT_3115 0.41 -0.5
422,880 + EX28DRAFT_3115 0.41 -0.7
422,881 - EX28DRAFT_3115 0.41 -0.8
422,900 + EX28DRAFT_3115 0.44 -1.0
422,900 + EX28DRAFT_3115 0.44 -0.3
422,901 - EX28DRAFT_3115 0.45 +0.0
422,901 - EX28DRAFT_3115 0.45 -0.0
422,901 - EX28DRAFT_3115 0.45 -0.5
422,901 - EX28DRAFT_3115 0.45 +0.5
422,901 - EX28DRAFT_3115 0.45 +0.2
422,984 + EX28DRAFT_3115 0.58 -0.3
423,012 + EX28DRAFT_3115 0.63 +0.2
423,012 + EX28DRAFT_3115 0.63 -0.1
423,013 - EX28DRAFT_3115 0.63 -0.2
423,013 - EX28DRAFT_3115 0.63 -0.6
423,013 - EX28DRAFT_3115 0.63 +0.4
423,014 + EX28DRAFT_3115 0.63 +0.4
423,014 + EX28DRAFT_3115 0.63 +0.0
423,015 - EX28DRAFT_3115 0.64 -0.1
423,015 - EX28DRAFT_3115 0.64 +0.4
423,027 + EX28DRAFT_3115 0.66 -0.1
423,028 - EX28DRAFT_3115 0.66 -0.3
423,046 + EX28DRAFT_3115 0.69 -0.3
423,047 - EX28DRAFT_3115 0.69 +0.1
423,051 + EX28DRAFT_3115 0.70 -0.1
423,143 + EX28DRAFT_3115 0.85 -0.2

Or see this region's nucleotide sequence