Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3082

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3081 and EX28DRAFT_3082 are separated by 21 nucleotidesEX28DRAFT_3082 and EX28DRAFT_3083 are separated by 226 nucleotidesEX28DRAFT_3083 and EX28DRAFT_3084 are separated by 60 nucleotides EX28DRAFT_3081: EX28DRAFT_3081 - Glutamine synthetase adenylyltransferase, at 391,326 to 394,181 _3081 EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504 _3082 EX28DRAFT_3083: EX28DRAFT_3083 - SH3 domain protein, at 395,731 to 396,354 _3083 EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656 _3084 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1at 393.290 kb on + strand, within EX28DRAFT_3081at 393.326 kb on - strand, within EX28DRAFT_3081at 393.326 kb on - strand, within EX28DRAFT_3081at 393.452 kb on - strand, within EX28DRAFT_3081at 393.452 kb on - strand, within EX28DRAFT_3081at 393.828 kb on + strand, within EX28DRAFT_3081at 393.855 kb on + strand, within EX28DRAFT_3081at 394.182 kb on + strandat 394.182 kb on + strandat 394.183 kb on - strandat 394.183 kb on - strandat 394.185 kb on - strandat 394.185 kb on - strandat 394.204 kb on + strandat 394.204 kb on + strandat 394.411 kb on + strand, within EX28DRAFT_3082at 394.411 kb on + strand, within EX28DRAFT_3082at 394.440 kb on - strand, within EX28DRAFT_3082at 394.600 kb on + strand, within EX28DRAFT_3082at 394.666 kb on - strand, within EX28DRAFT_3082at 395.254 kb on + strand, within EX28DRAFT_3082at 395.254 kb on + strand, within EX28DRAFT_3082at 395.271 kb on + strand, within EX28DRAFT_3082at 395.271 kb on + strand, within EX28DRAFT_3082at 395.387 kb on - strandat 395.390 kb on + strandat 395.390 kb on + strandat 395.391 kb on - strandat 395.391 kb on - strandat 395.391 kb on - strandat 395.393 kb on + strandat 395.393 kb on + strandat 395.432 kb on + strandat 395.485 kb on - strandat 395.574 kb on + strandat 395.575 kb on - strandat 395.575 kb on - strandat 395.578 kb on + strandat 395.578 kb on + strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.581 kb on + strandat 395.582 kb on - strandat 395.582 kb on - strandat 395.582 kb on - strandat 395.625 kb on - strandat 395.632 kb on + strandat 395.699 kb on + strandat 395.699 kb on + strandat 395.700 kb on - strandat 395.711 kb on - strandat 395.723 kb on - strandat 395.729 kb on + strandat 395.730 kb on - strandat 395.740 kb on - strandat 395.760 kb on + strandat 395.761 kb on - strandat 395.765 kb on + strandat 395.766 kb on - strandat 395.840 kb on + strand, within EX28DRAFT_3083at 395.845 kb on - strand, within EX28DRAFT_3083at 395.845 kb on - strand, within EX28DRAFT_3083at 395.860 kb on - strand, within EX28DRAFT_3083at 396.197 kb on + strand, within EX28DRAFT_3083at 396.255 kb on + strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.259 kb on + strand, within EX28DRAFT_3083at 396.260 kb on - strand, within EX28DRAFT_3083at 396.352 kb on + strandat 396.352 kb on + strandat 396.353 kb on - strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.376 kb on - strandat 396.376 kb on - strandat 396.376 kb on - strandat 396.379 kb on + strandat 396.380 kb on - strandat 396.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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393,290 + EX28DRAFT_3081 0.69 -0.1
393,326 - EX28DRAFT_3081 0.70 -0.2
393,326 - EX28DRAFT_3081 0.70 -0.5
393,452 - EX28DRAFT_3081 0.74 -0.3
393,452 - EX28DRAFT_3081 0.74 -1.1
393,828 + EX28DRAFT_3081 0.88 -0.2
393,855 + EX28DRAFT_3081 0.89 +0.1
394,182 + +0.1
394,182 + +0.2
394,183 - +0.2
394,183 - -0.4
394,185 - +0.3
394,185 - -0.1
394,204 + +0.9
394,204 + +0.1
394,411 + EX28DRAFT_3082 0.16 -0.4
394,411 + EX28DRAFT_3082 0.16 +0.9
394,440 - EX28DRAFT_3082 0.18 -0.3
394,600 + EX28DRAFT_3082 0.30 -0.3
394,666 - EX28DRAFT_3082 0.36 -1.1
395,254 + EX28DRAFT_3082 0.81 -0.6
395,254 + EX28DRAFT_3082 0.81 -1.1
395,271 + EX28DRAFT_3082 0.82 -0.6
395,271 + EX28DRAFT_3082 0.82 -1.8
395,387 - -1.6
395,390 + +0.4
395,390 + -0.7
395,391 - -1.4
395,391 - -1.9
395,391 - -0.8
395,393 + -1.8
395,393 + +0.3
395,432 + -1.7
395,485 - -1.9
395,574 + -0.5
395,575 - -0.1
395,575 - +0.7
395,578 + -0.7
395,578 + +0.3
395,579 - -0.2
395,579 - -0.2
395,579 - -2.0
395,579 - +0.1
395,581 + -1.2
395,582 - -0.0
395,582 - -0.8
395,582 - -1.7
395,625 - +0.6
395,632 + -0.3
395,699 + -0.1
395,699 + +0.5
395,700 - +0.1
395,711 - +0.1
395,723 - -0.5
395,729 + +1.4
395,730 - -0.7
395,740 - -0.1
395,760 + +0.9
395,761 - -0.8
395,765 + -0.1
395,766 - -0.1
395,840 + EX28DRAFT_3083 0.17 +0.0
395,845 - EX28DRAFT_3083 0.18 -0.7
395,845 - EX28DRAFT_3083 0.18 +0.3
395,860 - EX28DRAFT_3083 0.21 -0.1
396,197 + EX28DRAFT_3083 0.75 -0.2
396,255 + EX28DRAFT_3083 0.84 -0.0
396,256 - EX28DRAFT_3083 0.84 -0.9
396,256 - EX28DRAFT_3083 0.84 -0.1
396,256 - EX28DRAFT_3083 0.84 -0.3
396,256 - EX28DRAFT_3083 0.84 +0.5
396,259 + EX28DRAFT_3083 0.85 -0.4
396,260 - EX28DRAFT_3083 0.85 -0.5
396,352 + +0.1
396,352 + +0.2
396,353 - -0.4
396,375 + +0.8
396,375 + -0.3
396,375 + +1.3
396,375 + -0.2
396,376 - -0.6
396,376 - -0.4
396,376 - -0.6
396,379 + -0.7
396,380 - -1.4
396,380 - -0.6

Or see this region's nucleotide sequence