Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3009 and EX28DRAFT_3010 are separated by 345 nucleotides EX28DRAFT_3010 and EX28DRAFT_3011 overlap by 11 nucleotides EX28DRAFT_3011 and EX28DRAFT_3012 are separated by 54 nucleotides
EX28DRAFT_3009: EX28DRAFT_3009 - Na+/citrate symporter, at 316,581 to 317,942
_3009
EX28DRAFT_3010: EX28DRAFT_3010 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 318,288 to 319,913
_3010
EX28DRAFT_3011: EX28DRAFT_3011 - Response regulator of citrate/malate metabolism, at 319,903 to 320,595
_3011
EX28DRAFT_3012: EX28DRAFT_3012 - Arginine/lysine/ornithine decarboxylases, at 320,650 to 322,785
_3012
Position (kb) 318
319
320 Strain fitness (log2 ratio) -1
0
1 at 317.551 kb on + strand, within EX28DRAFT_3009 at 317.552 kb on - strand, within EX28DRAFT_3009 at 317.558 kb on - strand, within EX28DRAFT_3009 at 317.558 kb on - strand, within EX28DRAFT_3009 at 317.627 kb on - strand, within EX28DRAFT_3009 at 317.790 kb on - strand, within EX28DRAFT_3009 at 317.831 kb on + strand at 317.859 kb on - strand at 317.943 kb on - strand at 318.133 kb on - strand at 318.309 kb on - strand at 318.539 kb on + strand, within EX28DRAFT_3010 at 318.539 kb on + strand, within EX28DRAFT_3010 at 318.557 kb on + strand, within EX28DRAFT_3010 at 318.635 kb on - strand, within EX28DRAFT_3010 at 318.751 kb on - strand, within EX28DRAFT_3010 at 318.762 kb on + strand, within EX28DRAFT_3010 at 318.762 kb on + strand, within EX28DRAFT_3010 at 318.797 kb on + strand, within EX28DRAFT_3010 at 318.837 kb on - strand, within EX28DRAFT_3010 at 318.837 kb on - strand, within EX28DRAFT_3010 at 318.863 kb on + strand, within EX28DRAFT_3010 at 318.941 kb on + strand, within EX28DRAFT_3010 at 318.945 kb on + strand, within EX28DRAFT_3010 at 319.058 kb on - strand, within EX28DRAFT_3010 at 319.269 kb on + strand, within EX28DRAFT_3010 at 319.270 kb on - strand, within EX28DRAFT_3010 at 319.306 kb on + strand, within EX28DRAFT_3010 at 319.369 kb on - strand, within EX28DRAFT_3010 at 319.412 kb on + strand, within EX28DRAFT_3010 at 319.643 kb on - strand, within EX28DRAFT_3010 at 319.667 kb on + strand, within EX28DRAFT_3010 at 319.789 kb on - strand at 319.860 kb on - strand at 320.076 kb on + strand, within EX28DRAFT_3011 at 320.100 kb on + strand, within EX28DRAFT_3011 at 320.154 kb on + strand, within EX28DRAFT_3011 at 320.155 kb on - strand, within EX28DRAFT_3011 at 320.157 kb on + strand, within EX28DRAFT_3011 at 320.215 kb on + strand, within EX28DRAFT_3011 at 320.354 kb on - strand, within EX28DRAFT_3011 at 320.392 kb on - strand, within EX28DRAFT_3011 at 320.575 kb on + strand at 320.575 kb on + strand at 320.575 kb on + strand at 320.575 kb on + strand at 320.576 kb on - strand at 320.576 kb on - strand at 320.576 kb on - strand at 320.651 kb on + strand at 320.651 kb on + strand at 320.651 kb on + strand at 320.656 kb on + strand at 320.656 kb on + strand at 320.656 kb on + strand at 320.656 kb on + strand at 320.656 kb on + strand at 320.659 kb on + strand at 320.659 kb on + strand at 320.659 kb on + strand at 320.659 kb on + strand at 320.659 kb on + strand at 320.659 kb on + strand at 320.660 kb on - strand at 320.660 kb on - strand at 320.660 kb on - strand at 320.663 kb on + strand at 320.663 kb on + strand at 320.664 kb on - strand at 320.771 kb on + strand at 320.772 kb on - strand at 320.905 kb on - strand, within EX28DRAFT_3012 at 320.907 kb on - strand, within EX28DRAFT_3012 at 320.907 kb on - strand, within EX28DRAFT_3012 at 320.907 kb on - strand, within EX28DRAFT_3012 at 320.907 kb on - strand, within EX28DRAFT_3012
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 317,551 + EX28DRAFT_3009 0.71 -0.7 317,552 - EX28DRAFT_3009 0.71 -0.2 317,558 - EX28DRAFT_3009 0.72 +0.5 317,558 - EX28DRAFT_3009 0.72 -0.2 317,627 - EX28DRAFT_3009 0.77 +0.1 317,790 - EX28DRAFT_3009 0.89 -0.0 317,831 + -0.0 317,859 - -0.8 317,943 - -0.4 318,133 - -0.0 318,309 - -0.5 318,539 + EX28DRAFT_3010 0.15 -0.5 318,539 + EX28DRAFT_3010 0.15 -0.7 318,557 + EX28DRAFT_3010 0.17 +0.1 318,635 - EX28DRAFT_3010 0.21 +0.4 318,751 - EX28DRAFT_3010 0.28 +0.5 318,762 + EX28DRAFT_3010 0.29 -0.5 318,762 + EX28DRAFT_3010 0.29 +0.6 318,797 + EX28DRAFT_3010 0.31 -0.1 318,837 - EX28DRAFT_3010 0.34 -1.5 318,837 - EX28DRAFT_3010 0.34 -0.7 318,863 + EX28DRAFT_3010 0.35 -0.2 318,941 + EX28DRAFT_3010 0.40 +0.2 318,945 + EX28DRAFT_3010 0.40 +0.6 319,058 - EX28DRAFT_3010 0.47 -1.3 319,269 + EX28DRAFT_3010 0.60 -0.1 319,270 - EX28DRAFT_3010 0.60 -0.8 319,306 + EX28DRAFT_3010 0.63 -0.5 319,369 - EX28DRAFT_3010 0.66 -0.2 319,412 + EX28DRAFT_3010 0.69 +0.1 319,643 - EX28DRAFT_3010 0.83 +0.1 319,667 + EX28DRAFT_3010 0.85 +0.7 319,789 - +0.5 319,860 - -1.5 320,076 + EX28DRAFT_3011 0.25 -0.3 320,100 + EX28DRAFT_3011 0.28 -0.2 320,154 + EX28DRAFT_3011 0.36 -1.4 320,155 - EX28DRAFT_3011 0.36 +0.1 320,157 + EX28DRAFT_3011 0.37 +1.0 320,215 + EX28DRAFT_3011 0.45 -0.1 320,354 - EX28DRAFT_3011 0.65 -0.2 320,392 - EX28DRAFT_3011 0.71 -0.1 320,575 + +0.1 320,575 + -0.0 320,575 + -0.2 320,575 + +0.0 320,576 - -0.9 320,576 - +0.1 320,576 - -0.4 320,651 + -0.2 320,651 + +0.1 320,651 + -0.1 320,656 + -0.0 320,656 + -0.1 320,656 + +0.1 320,656 + +0.1 320,656 + +0.2 320,659 + -0.4 320,659 + -0.4 320,659 + +0.1 320,659 + -0.3 320,659 + +0.0 320,659 + -0.4 320,660 - -0.7 320,660 - +0.3 320,660 - -0.6 320,663 + +1.4 320,663 + -0.1 320,664 - +0.1 320,771 + -0.3 320,772 - +0.0 320,905 - EX28DRAFT_3012 0.12 +0.0 320,907 - EX28DRAFT_3012 0.12 +0.1 320,907 - EX28DRAFT_3012 0.12 -0.1 320,907 - EX28DRAFT_3012 0.12 +0.7 320,907 - EX28DRAFT_3012 0.12 -0.0
Or see this region's nucleotide sequence