Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2934 and EX28DRAFT_2935 overlap by 8 nucleotides EX28DRAFT_2935 and EX28DRAFT_2936 are separated by 777 nucleotides
EX28DRAFT_2934: EX28DRAFT_2934 - ABC-type Fe3+ transport system, permease component, at 244,134 to 245,903
_2934
EX28DRAFT_2935: EX28DRAFT_2935 - ABC-type spermidine/putrescine transport systems, ATPase components, at 245,896 to 246,966
_2935
EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346
_2936
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 245.269 kb on - strand, within EX28DRAFT_2934 at 245.328 kb on + strand, within EX28DRAFT_2934 at 245.532 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.568 kb on - strand, within EX28DRAFT_2934 at 245.727 kb on + strand at 245.742 kb on + strand at 245.742 kb on + strand at 245.742 kb on + strand at 245.743 kb on - strand at 245.857 kb on + strand at 245.893 kb on + strand at 245.893 kb on + strand at 245.894 kb on - strand at 245.951 kb on + strand at 246.088 kb on - strand, within EX28DRAFT_2935 at 246.090 kb on + strand, within EX28DRAFT_2935 at 246.091 kb on - strand, within EX28DRAFT_2935 at 246.139 kb on - strand, within EX28DRAFT_2935 at 246.362 kb on - strand, within EX28DRAFT_2935 at 246.535 kb on - strand, within EX28DRAFT_2935 at 246.535 kb on - strand, within EX28DRAFT_2935 at 246.577 kb on + strand, within EX28DRAFT_2935 at 246.577 kb on + strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.844 kb on + strand, within EX28DRAFT_2935 at 246.887 kb on - strand at 246.980 kb on - strand at 247.096 kb on + strand at 247.163 kb on + strand at 247.188 kb on + strand at 247.199 kb on - strand at 247.224 kb on - strand at 247.393 kb on + strand at 247.397 kb on - strand at 247.425 kb on + strand at 247.438 kb on + strand at 247.477 kb on + strand at 247.479 kb on + strand at 247.492 kb on + strand at 247.561 kb on + strand at 247.662 kb on + strand at 247.663 kb on - strand at 247.663 kb on - strand at 247.703 kb on - strand at 247.703 kb on - strand at 247.778 kb on + strand at 247.812 kb on + strand, within EX28DRAFT_2936 at 247.814 kb on + strand, within EX28DRAFT_2936 at 247.831 kb on + strand, within EX28DRAFT_2936 at 247.844 kb on + strand, within EX28DRAFT_2936 at 247.868 kb on + strand, within EX28DRAFT_2936 at 247.869 kb on - strand, within EX28DRAFT_2936 at 247.869 kb on - strand, within EX28DRAFT_2936 at 247.893 kb on - strand, within EX28DRAFT_2936
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 245,269 - EX28DRAFT_2934 0.64 +0.0 245,328 + EX28DRAFT_2934 0.67 -0.3 245,532 + EX28DRAFT_2934 0.79 -1.0 245,567 + EX28DRAFT_2934 0.81 +0.1 245,567 + EX28DRAFT_2934 0.81 +0.3 245,567 + EX28DRAFT_2934 0.81 +0.4 245,568 - EX28DRAFT_2934 0.81 +1.2 245,727 + +0.1 245,742 + +0.0 245,742 + +0.3 245,742 + +0.6 245,743 - +0.2 245,857 + +0.6 245,893 + -1.9 245,893 + -0.3 245,894 - -0.5 245,951 + +0.2 246,088 - EX28DRAFT_2935 0.18 -0.6 246,090 + EX28DRAFT_2935 0.18 +0.3 246,091 - EX28DRAFT_2935 0.18 -0.4 246,139 - EX28DRAFT_2935 0.23 -0.4 246,362 - EX28DRAFT_2935 0.44 +0.4 246,535 - EX28DRAFT_2935 0.60 -0.3 246,535 - EX28DRAFT_2935 0.60 -0.1 246,577 + EX28DRAFT_2935 0.64 -3.0 246,577 + EX28DRAFT_2935 0.64 -0.9 246,578 - EX28DRAFT_2935 0.64 -0.3 246,578 - EX28DRAFT_2935 0.64 -0.6 246,578 - EX28DRAFT_2935 0.64 +0.1 246,823 + EX28DRAFT_2935 0.87 -0.3 246,823 + EX28DRAFT_2935 0.87 -0.3 246,823 + EX28DRAFT_2935 0.87 -0.0 246,844 + EX28DRAFT_2935 0.89 -0.1 246,887 - -0.0 246,980 - +0.7 247,096 + +0.4 247,163 + -0.1 247,188 + -1.2 247,199 - -0.3 247,224 - +0.1 247,393 + +0.0 247,397 - +3.3 247,425 + +1.3 247,438 + +0.6 247,477 + -0.3 247,479 + -0.0 247,492 + -0.2 247,561 + -0.7 247,662 + -0.1 247,663 - -0.3 247,663 - +2.0 247,703 - -0.4 247,703 - +0.1 247,778 + -0.6 247,812 + EX28DRAFT_2936 0.11 +0.3 247,814 + EX28DRAFT_2936 0.12 -0.2 247,831 + EX28DRAFT_2936 0.14 -0.0 247,844 + EX28DRAFT_2936 0.17 -0.1 247,868 + EX28DRAFT_2936 0.21 -0.1 247,869 - EX28DRAFT_2936 0.21 -0.2 247,869 - EX28DRAFT_2936 0.21 -0.9 247,893 - EX28DRAFT_2936 0.25 -0.1
Or see this region's nucleotide sequence