Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2893 and EX28DRAFT_2894 are separated by 34 nucleotides EX28DRAFT_2894 and EX28DRAFT_2895 overlap by 4 nucleotides
EX28DRAFT_2893: EX28DRAFT_2893 - N-acetylglutamate synthase (EC 2.3.1.1), at 197,070 to 198,401
_2893
EX28DRAFT_2894: EX28DRAFT_2894 - DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5), at 198,436 to 200,256
_2894
EX28DRAFT_2895: EX28DRAFT_2895 - DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5), at 200,253 to 203,795
_2895
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 197.549 kb on + strand, within EX28DRAFT_2893 at 197.549 kb on + strand, within EX28DRAFT_2893 at 197.550 kb on - strand, within EX28DRAFT_2893 at 197.877 kb on + strand, within EX28DRAFT_2893 at 198.189 kb on - strand, within EX28DRAFT_2893 at 198.354 kb on + strand at 198.354 kb on + strand at 198.354 kb on + strand at 198.355 kb on - strand at 198.355 kb on - strand at 198.355 kb on - strand at 198.360 kb on + strand at 198.360 kb on + strand at 198.361 kb on - strand at 198.361 kb on - strand at 198.361 kb on - strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.561 kb on - strand at 198.580 kb on + strand at 198.580 kb on + strand at 198.580 kb on + strand at 198.580 kb on + strand at 198.642 kb on + strand, within EX28DRAFT_2894 at 198.643 kb on - strand, within EX28DRAFT_2894 at 198.948 kb on - strand, within EX28DRAFT_2894 at 198.982 kb on - strand, within EX28DRAFT_2894 at 198.995 kb on - strand, within EX28DRAFT_2894 at 198.995 kb on - strand, within EX28DRAFT_2894 at 199.049 kb on + strand, within EX28DRAFT_2894 at 199.084 kb on - strand, within EX28DRAFT_2894 at 199.313 kb on + strand, within EX28DRAFT_2894 at 199.937 kb on + strand, within EX28DRAFT_2894 at 199.937 kb on + strand, within EX28DRAFT_2894 at 199.937 kb on + strand, within EX28DRAFT_2894 at 199.939 kb on + strand, within EX28DRAFT_2894 at 199.939 kb on + strand, within EX28DRAFT_2894 at 200.008 kb on + strand, within EX28DRAFT_2894 at 200.008 kb on + strand, within EX28DRAFT_2894 at 200.009 kb on - strand, within EX28DRAFT_2894 at 200.107 kb on + strand at 200.107 kb on + strand at 200.107 kb on + strand at 200.107 kb on + strand at 200.107 kb on + strand at 200.107 kb on + strand at 200.107 kb on + strand at 200.108 kb on - strand at 200.108 kb on - strand at 200.108 kb on - strand at 200.108 kb on - strand at 200.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 197,549 + EX28DRAFT_2893 0.36 -3.8 197,549 + EX28DRAFT_2893 0.36 -2.4 197,550 - EX28DRAFT_2893 0.36 -3.9 197,877 + EX28DRAFT_2893 0.61 +0.5 198,189 - EX28DRAFT_2893 0.84 +0.4 198,354 + -2.7 198,354 + -2.6 198,354 + -1.1 198,355 - -0.9 198,355 - -2.0 198,355 - -2.3 198,360 + -2.2 198,360 + +0.1 198,361 - -1.3 198,361 - +0.2 198,361 - -0.3 198,560 + +1.6 198,560 + -0.1 198,560 + +0.4 198,561 - +0.0 198,580 + +0.5 198,580 + +0.1 198,580 + -0.2 198,580 + -0.0 198,642 + EX28DRAFT_2894 0.11 -0.5 198,643 - EX28DRAFT_2894 0.11 -0.8 198,948 - EX28DRAFT_2894 0.28 -0.5 198,982 - EX28DRAFT_2894 0.30 +2.0 198,995 - EX28DRAFT_2894 0.31 -0.7 198,995 - EX28DRAFT_2894 0.31 -1.3 199,049 + EX28DRAFT_2894 0.34 -0.1 199,084 - EX28DRAFT_2894 0.36 +0.2 199,313 + EX28DRAFT_2894 0.48 +0.2 199,937 + EX28DRAFT_2894 0.82 +0.7 199,937 + EX28DRAFT_2894 0.82 -0.2 199,937 + EX28DRAFT_2894 0.82 -0.5 199,939 + EX28DRAFT_2894 0.83 -0.1 199,939 + EX28DRAFT_2894 0.83 +0.3 200,008 + EX28DRAFT_2894 0.86 +0.9 200,008 + EX28DRAFT_2894 0.86 -0.1 200,009 - EX28DRAFT_2894 0.86 +0.7 200,107 + +0.7 200,107 + -1.0 200,107 + +2.0 200,107 + +0.3 200,107 + -0.5 200,107 + -0.0 200,107 + -0.1 200,108 - +0.9 200,108 - -0.0 200,108 - -1.2 200,108 - +0.5 200,108 - +0.0
Or see this region's nucleotide sequence