Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2867 and EX28DRAFT_2868 are separated by 77 nucleotides EX28DRAFT_2868 and EX28DRAFT_2869 are separated by 15 nucleotides
EX28DRAFT_2867: EX28DRAFT_2867 - glycerate kinase, at 173,329 to 174,468
_2867
EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883
_2868
EX28DRAFT_2869: EX28DRAFT_2869 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 175,899 to 177,239
_2869
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1 at 173.641 kb on + strand, within EX28DRAFT_2867 at 173.642 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.849 kb on - strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.085 kb on - strand, within EX28DRAFT_2867 at 174.117 kb on + strand, within EX28DRAFT_2867 at 174.118 kb on - strand, within EX28DRAFT_2867 at 174.156 kb on + strand, within EX28DRAFT_2867 at 174.401 kb on - strand at 174.440 kb on + strand at 174.441 kb on - strand at 174.441 kb on - strand at 174.480 kb on - strand at 174.485 kb on + strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.503 kb on + strand at 174.513 kb on - strand at 174.547 kb on + strand at 174.552 kb on + strand at 174.598 kb on + strand at 174.750 kb on - strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.867 kb on - strand, within EX28DRAFT_2868 at 175.284 kb on - strand, within EX28DRAFT_2868 at 175.291 kb on + strand, within EX28DRAFT_2868 at 175.439 kb on - strand, within EX28DRAFT_2868 at 175.623 kb on - strand, within EX28DRAFT_2868 at 175.770 kb on - strand at 175.877 kb on + strand at 175.947 kb on + strand at 175.954 kb on + strand at 175.954 kb on + strand at 176.001 kb on - strand at 176.376 kb on - strand, within EX28DRAFT_2869 at 176.785 kb on + strand, within EX28DRAFT_2869 at 176.786 kb on - strand, within EX28DRAFT_2869 at 176.795 kb on - strand, within EX28DRAFT_2869
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 173,641 + EX28DRAFT_2867 0.27 +1.2 173,642 - EX28DRAFT_2867 0.27 -0.3 173,784 - EX28DRAFT_2867 0.40 +0.7 173,784 - EX28DRAFT_2867 0.40 +0.3 173,849 - EX28DRAFT_2867 0.46 +0.2 174,084 + EX28DRAFT_2867 0.66 +0.2 174,084 + EX28DRAFT_2867 0.66 -1.0 174,084 + EX28DRAFT_2867 0.66 +0.3 174,085 - EX28DRAFT_2867 0.66 -0.5 174,117 + EX28DRAFT_2867 0.69 -0.2 174,118 - EX28DRAFT_2867 0.69 -0.1 174,156 + EX28DRAFT_2867 0.73 -0.1 174,401 - -0.1 174,440 + -0.6 174,441 - -0.1 174,441 - +0.8 174,480 - +0.1 174,485 + +0.3 174,486 - +0.3 174,486 - -0.3 174,486 - +0.3 174,503 + +0.3 174,513 - -0.2 174,547 + -0.5 174,552 + -0.1 174,598 + +0.1 174,750 - EX28DRAFT_2868 0.15 +0.2 174,866 + EX28DRAFT_2868 0.24 +0.3 174,866 + EX28DRAFT_2868 0.24 +0.9 174,867 - EX28DRAFT_2868 0.24 -0.9 175,284 - EX28DRAFT_2868 0.55 -0.0 175,291 + EX28DRAFT_2868 0.56 +0.1 175,439 - EX28DRAFT_2868 0.67 +0.2 175,623 - EX28DRAFT_2868 0.80 -0.3 175,770 - +0.2 175,877 + +0.1 175,947 + +0.3 175,954 + -0.3 175,954 + -0.5 176,001 - -0.8 176,376 - EX28DRAFT_2869 0.36 -0.2 176,785 + EX28DRAFT_2869 0.66 +0.1 176,786 - EX28DRAFT_2869 0.66 -0.0 176,795 - EX28DRAFT_2869 0.67 -0.2
Or see this region's nucleotide sequence