Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2821

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2820 and EX28DRAFT_2821 overlap by 4 nucleotidesEX28DRAFT_2821 and EX28DRAFT_2822 are separated by 61 nucleotides EX28DRAFT_2820: EX28DRAFT_2820 - hydrogenase expression/formation protein HypD, at 122,295 to 123,416 _2820 EX28DRAFT_2821: EX28DRAFT_2821 - hydrogenase expression/formation protein HypE, at 123,413 to 124,423 _2821 EX28DRAFT_2822: EX28DRAFT_2822 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 124,485 to 126,557 _2822 Position (kb) 123 124 125Strain fitness (log2 ratio) -1 0 1 2at 122.661 kb on + strand, within EX28DRAFT_2820at 122.661 kb on + strand, within EX28DRAFT_2820at 122.662 kb on - strand, within EX28DRAFT_2820at 122.662 kb on - strand, within EX28DRAFT_2820at 122.754 kb on - strand, within EX28DRAFT_2820at 122.823 kb on - strand, within EX28DRAFT_2820at 122.823 kb on - strand, within EX28DRAFT_2820at 122.946 kb on + strand, within EX28DRAFT_2820at 122.947 kb on - strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820at 123.318 kb on - strandat 123.318 kb on - strandat 123.385 kb on - strandat 123.470 kb on - strandat 123.590 kb on + strand, within EX28DRAFT_2821at 123.590 kb on + strand, within EX28DRAFT_2821at 123.591 kb on - strand, within EX28DRAFT_2821at 123.591 kb on - strand, within EX28DRAFT_2821at 123.680 kb on - strand, within EX28DRAFT_2821at 123.690 kb on - strand, within EX28DRAFT_2821at 124.165 kb on + strand, within EX28DRAFT_2821at 124.484 kb on + strandat 124.491 kb on + strandat 124.491 kb on + strandat 124.492 kb on - strandat 124.493 kb on + strandat 124.550 kb on - strandat 124.666 kb on - strandat 124.668 kb on + strandat 124.669 kb on - strandat 124.669 kb on - strandat 124.716 kb on + strand, within EX28DRAFT_2822at 124.717 kb on - strand, within EX28DRAFT_2822at 124.744 kb on + strand, within EX28DRAFT_2822at 124.895 kb on + strand, within EX28DRAFT_2822at 124.933 kb on - strand, within EX28DRAFT_2822at 124.933 kb on - strand, within EX28DRAFT_2822at 125.013 kb on + strand, within EX28DRAFT_2822at 125.134 kb on - strand, within EX28DRAFT_2822at 125.196 kb on + strand, within EX28DRAFT_2822at 125.209 kb on - strand, within EX28DRAFT_2822at 125.355 kb on - strand, within EX28DRAFT_2822

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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122,661 + EX28DRAFT_2820 0.33 -0.1
122,661 + EX28DRAFT_2820 0.33 -0.6
122,662 - EX28DRAFT_2820 0.33 +0.2
122,662 - EX28DRAFT_2820 0.33 +0.2
122,754 - EX28DRAFT_2820 0.41 +0.5
122,823 - EX28DRAFT_2820 0.47 -0.3
122,823 - EX28DRAFT_2820 0.47 +0.5
122,946 + EX28DRAFT_2820 0.58 +0.2
122,947 - EX28DRAFT_2820 0.58 -0.4
122,989 + EX28DRAFT_2820 0.62 -0.2
122,989 + EX28DRAFT_2820 0.62 -0.1
122,989 + EX28DRAFT_2820 0.62 -0.3
123,318 - -0.3
123,318 - +1.2
123,385 - -0.9
123,470 - -1.1
123,590 + EX28DRAFT_2821 0.18 +0.0
123,590 + EX28DRAFT_2821 0.18 -0.1
123,591 - EX28DRAFT_2821 0.18 -0.7
123,591 - EX28DRAFT_2821 0.18 -0.6
123,680 - EX28DRAFT_2821 0.26 -0.5
123,690 - EX28DRAFT_2821 0.27 -0.1
124,165 + EX28DRAFT_2821 0.74 -0.4
124,484 + +0.6
124,491 + +0.3
124,491 + +0.2
124,492 - -0.2
124,493 + -0.5
124,550 - +0.7
124,666 - -0.3
124,668 + -0.2
124,669 - -0.4
124,669 - -0.1
124,716 + EX28DRAFT_2822 0.11 -0.0
124,717 - EX28DRAFT_2822 0.11 +0.0
124,744 + EX28DRAFT_2822 0.12 -0.0
124,895 + EX28DRAFT_2822 0.20 +2.0
124,933 - EX28DRAFT_2822 0.22 -0.1
124,933 - EX28DRAFT_2822 0.22 +0.3
125,013 + EX28DRAFT_2822 0.25 +0.1
125,134 - EX28DRAFT_2822 0.31 +0.0
125,196 + EX28DRAFT_2822 0.34 -0.2
125,209 - EX28DRAFT_2822 0.35 -0.3
125,355 - EX28DRAFT_2822 0.42 -0.3

Or see this region's nucleotide sequence