Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2820 and EX28DRAFT_2821 overlap by 4 nucleotides EX28DRAFT_2821 and EX28DRAFT_2822 are separated by 61 nucleotides
EX28DRAFT_2820: EX28DRAFT_2820 - hydrogenase expression/formation protein HypD, at 122,295 to 123,416
_2820
EX28DRAFT_2821: EX28DRAFT_2821 - hydrogenase expression/formation protein HypE, at 123,413 to 124,423
_2821
EX28DRAFT_2822: EX28DRAFT_2822 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 124,485 to 126,557
_2822
Position (kb)
123
124
125 Strain fitness (log2 ratio)
-1
0
1
2 at 122.661 kb on + strand, within EX28DRAFT_2820 at 122.661 kb on + strand, within EX28DRAFT_2820 at 122.662 kb on - strand, within EX28DRAFT_2820 at 122.662 kb on - strand, within EX28DRAFT_2820 at 122.754 kb on - strand, within EX28DRAFT_2820 at 122.823 kb on - strand, within EX28DRAFT_2820 at 122.823 kb on - strand, within EX28DRAFT_2820 at 122.946 kb on + strand, within EX28DRAFT_2820 at 122.947 kb on - strand, within EX28DRAFT_2820 at 122.989 kb on + strand, within EX28DRAFT_2820 at 122.989 kb on + strand, within EX28DRAFT_2820 at 122.989 kb on + strand, within EX28DRAFT_2820 at 123.318 kb on - strand at 123.318 kb on - strand at 123.385 kb on - strand at 123.470 kb on - strand at 123.590 kb on + strand, within EX28DRAFT_2821 at 123.590 kb on + strand, within EX28DRAFT_2821 at 123.591 kb on - strand, within EX28DRAFT_2821 at 123.591 kb on - strand, within EX28DRAFT_2821 at 123.680 kb on - strand, within EX28DRAFT_2821 at 123.690 kb on - strand, within EX28DRAFT_2821 at 124.165 kb on + strand, within EX28DRAFT_2821 at 124.484 kb on + strand at 124.491 kb on + strand at 124.491 kb on + strand at 124.492 kb on - strand at 124.493 kb on + strand at 124.550 kb on - strand at 124.666 kb on - strand at 124.668 kb on + strand at 124.669 kb on - strand at 124.669 kb on - strand at 124.716 kb on + strand, within EX28DRAFT_2822 at 124.717 kb on - strand, within EX28DRAFT_2822 at 124.744 kb on + strand, within EX28DRAFT_2822 at 124.895 kb on + strand, within EX28DRAFT_2822 at 124.933 kb on - strand, within EX28DRAFT_2822 at 124.933 kb on - strand, within EX28DRAFT_2822 at 125.013 kb on + strand, within EX28DRAFT_2822 at 125.134 kb on - strand, within EX28DRAFT_2822 at 125.196 kb on + strand, within EX28DRAFT_2822 at 125.209 kb on - strand, within EX28DRAFT_2822 at 125.355 kb on - strand, within EX28DRAFT_2822
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 122,661 + EX28DRAFT_2820 0.33 -0.1 122,661 + EX28DRAFT_2820 0.33 -0.6 122,662 - EX28DRAFT_2820 0.33 +0.2 122,662 - EX28DRAFT_2820 0.33 +0.2 122,754 - EX28DRAFT_2820 0.41 +0.5 122,823 - EX28DRAFT_2820 0.47 -0.3 122,823 - EX28DRAFT_2820 0.47 +0.5 122,946 + EX28DRAFT_2820 0.58 +0.2 122,947 - EX28DRAFT_2820 0.58 -0.4 122,989 + EX28DRAFT_2820 0.62 -0.2 122,989 + EX28DRAFT_2820 0.62 -0.1 122,989 + EX28DRAFT_2820 0.62 -0.3 123,318 - -0.3 123,318 - +1.2 123,385 - -0.9 123,470 - -1.1 123,590 + EX28DRAFT_2821 0.18 +0.0 123,590 + EX28DRAFT_2821 0.18 -0.1 123,591 - EX28DRAFT_2821 0.18 -0.7 123,591 - EX28DRAFT_2821 0.18 -0.6 123,680 - EX28DRAFT_2821 0.26 -0.5 123,690 - EX28DRAFT_2821 0.27 -0.1 124,165 + EX28DRAFT_2821 0.74 -0.4 124,484 + +0.6 124,491 + +0.3 124,491 + +0.2 124,492 - -0.2 124,493 + -0.5 124,550 - +0.7 124,666 - -0.3 124,668 + -0.2 124,669 - -0.4 124,669 - -0.1 124,716 + EX28DRAFT_2822 0.11 -0.0 124,717 - EX28DRAFT_2822 0.11 +0.0 124,744 + EX28DRAFT_2822 0.12 -0.0 124,895 + EX28DRAFT_2822 0.20 +2.0 124,933 - EX28DRAFT_2822 0.22 -0.1 124,933 - EX28DRAFT_2822 0.22 +0.3 125,013 + EX28DRAFT_2822 0.25 +0.1 125,134 - EX28DRAFT_2822 0.31 +0.0 125,196 + EX28DRAFT_2822 0.34 -0.2 125,209 - EX28DRAFT_2822 0.35 -0.3 125,355 - EX28DRAFT_2822 0.42 -0.3
Or see this region's nucleotide sequence