Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2802 and EX28DRAFT_2803 are separated by 1 nucleotides EX28DRAFT_2803 and EX28DRAFT_2804 are separated by 5 nucleotides EX28DRAFT_2804 and EX28DRAFT_2805 are separated by 134 nucleotides
EX28DRAFT_2802: EX28DRAFT_2802 - high-affinity nickel-transporter, HoxN/HupN/NixA family, at 104,688 to 105,710
_2802
EX28DRAFT_2803: EX28DRAFT_2803 - [NiFe] hydrogenase maturation protein HypF, at 105,712 to 107,928
_2803
EX28DRAFT_2804: EX28DRAFT_2804 - Fe-S-cluster-containing hydrogenase components 2, at 107,934 to 108,479
_2804
EX28DRAFT_2805: EX28DRAFT_2805 - Transcriptional regulators, at 108,614 to 109,627
_2805
Position (kb)
105
106
107
108 Strain fitness (log2 ratio)
-1
0
1 at 104.929 kb on + strand, within EX28DRAFT_2802 at 104.929 kb on + strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.167 kb on + strand, within EX28DRAFT_2802 at 105.714 kb on - strand at 105.810 kb on + strand at 105.810 kb on + strand at 105.824 kb on + strand at 106.373 kb on + strand, within EX28DRAFT_2803 at 106.373 kb on + strand, within EX28DRAFT_2803 at 106.753 kb on + strand, within EX28DRAFT_2803 at 106.753 kb on + strand, within EX28DRAFT_2803 at 106.753 kb on + strand, within EX28DRAFT_2803 at 106.754 kb on - strand, within EX28DRAFT_2803 at 106.754 kb on - strand, within EX28DRAFT_2803 at 106.754 kb on - strand, within EX28DRAFT_2803 at 106.754 kb on - strand, within EX28DRAFT_2803 at 106.768 kb on - strand, within EX28DRAFT_2803 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.041 kb on - strand, within EX28DRAFT_2803 at 107.041 kb on - strand, within EX28DRAFT_2803 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.674 kb on - strand, within EX28DRAFT_2803 at 107.911 kb on + strand at 107.912 kb on - strand at 107.928 kb on + strand at 107.928 kb on + strand at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.118 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.147 kb on + strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.254 kb on + strand, within EX28DRAFT_2804 at 108.320 kb on + strand, within EX28DRAFT_2804 at 108.327 kb on - strand, within EX28DRAFT_2804 at 108.432 kb on - strand at 108.449 kb on + strand at 108.450 kb on - strand at 108.467 kb on + strand at 108.468 kb on - strand at 108.468 kb on - strand at 108.495 kb on + strand at 108.496 kb on - strand at 108.502 kb on - strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.592 kb on - strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.752 kb on - strand, within EX28DRAFT_2805 at 108.780 kb on + strand, within EX28DRAFT_2805 at 108.781 kb on - strand, within EX28DRAFT_2805
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 104,929 + EX28DRAFT_2802 0.24 -0.9 104,929 + EX28DRAFT_2802 0.24 +0.4 105,152 - EX28DRAFT_2802 0.45 -0.3 105,152 - EX28DRAFT_2802 0.45 +0.6 105,152 - EX28DRAFT_2802 0.45 +0.3 105,152 - EX28DRAFT_2802 0.45 -0.1 105,152 - EX28DRAFT_2802 0.45 -0.5 105,152 - EX28DRAFT_2802 0.45 -0.8 105,152 - EX28DRAFT_2802 0.45 -0.0 105,167 + EX28DRAFT_2802 0.47 -0.3 105,714 - +0.1 105,810 + +0.1 105,810 + -0.2 105,824 + +0.3 106,373 + EX28DRAFT_2803 0.30 -0.1 106,373 + EX28DRAFT_2803 0.30 +0.0 106,753 + EX28DRAFT_2803 0.47 +0.6 106,753 + EX28DRAFT_2803 0.47 +0.4 106,753 + EX28DRAFT_2803 0.47 -0.1 106,754 - EX28DRAFT_2803 0.47 -0.7 106,754 - EX28DRAFT_2803 0.47 -0.4 106,754 - EX28DRAFT_2803 0.47 -1.7 106,754 - EX28DRAFT_2803 0.47 -0.2 106,768 - EX28DRAFT_2803 0.48 -0.5 107,040 + EX28DRAFT_2803 0.60 +0.3 107,040 + EX28DRAFT_2803 0.60 +0.7 107,040 + EX28DRAFT_2803 0.60 +0.4 107,041 - EX28DRAFT_2803 0.60 +0.9 107,041 - EX28DRAFT_2803 0.60 -0.2 107,673 + EX28DRAFT_2803 0.88 +0.2 107,673 + EX28DRAFT_2803 0.88 -0.5 107,674 - EX28DRAFT_2803 0.88 -0.8 107,911 + -0.6 107,912 - -0.5 107,928 + +0.0 107,928 + +0.3 108,117 + EX28DRAFT_2804 0.34 +0.1 108,117 + EX28DRAFT_2804 0.34 +0.3 108,118 - EX28DRAFT_2804 0.34 +0.1 108,145 - EX28DRAFT_2804 0.39 +0.9 108,145 - EX28DRAFT_2804 0.39 +1.1 108,147 + EX28DRAFT_2804 0.39 -0.1 108,229 - EX28DRAFT_2804 0.54 +0.3 108,229 - EX28DRAFT_2804 0.54 +0.0 108,229 - EX28DRAFT_2804 0.54 +0.9 108,254 + EX28DRAFT_2804 0.59 -0.4 108,320 + EX28DRAFT_2804 0.71 +1.2 108,327 - EX28DRAFT_2804 0.72 +0.6 108,432 - +0.5 108,449 + +0.1 108,450 - +0.2 108,467 + +0.3 108,468 - -0.0 108,468 - -0.8 108,495 + +0.1 108,496 - -0.4 108,502 - -0.4 108,591 + -0.5 108,591 + +0.1 108,591 + +0.6 108,592 - -0.3 108,682 + -0.6 108,682 + -0.3 108,682 + -0.1 108,682 + -1.0 108,752 - EX28DRAFT_2805 0.14 +0.4 108,780 + EX28DRAFT_2805 0.16 +0.5 108,781 - EX28DRAFT_2805 0.16 +0.5
Or see this region's nucleotide sequence