Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2353 and EX28DRAFT_2354 are separated by 122 nucleotides EX28DRAFT_2354 and EX28DRAFT_2355 overlap by 4 nucleotides EX28DRAFT_2355 and EX28DRAFT_2356 overlap by 4 nucleotides
EX28DRAFT_2353: EX28DRAFT_2353 - Aspartate/tyrosine/aromatic aminotransferase, at 2,374,084 to 2,375,244
_2353
EX28DRAFT_2354: EX28DRAFT_2354 - methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,375,367 to 2,375,981
_2354
EX28DRAFT_2355: EX28DRAFT_2355 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 2,375,978 to 2,376,667
_2355
EX28DRAFT_2356: EX28DRAFT_2356 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,376,664 to 2,377,206
_2356
Position (kb)
2375
2376 Strain fitness (log2 ratio)
-2
-1
0
1 at 2374.532 kb on + strand, within EX28DRAFT_2353 at 2374.532 kb on + strand, within EX28DRAFT_2353 at 2374.653 kb on - strand, within EX28DRAFT_2353 at 2374.862 kb on + strand, within EX28DRAFT_2353 at 2374.863 kb on - strand, within EX28DRAFT_2353 at 2374.871 kb on + strand, within EX28DRAFT_2353 at 2374.932 kb on - strand, within EX28DRAFT_2353 at 2374.962 kb on + strand, within EX28DRAFT_2353 at 2374.963 kb on - strand, within EX28DRAFT_2353 at 2375.085 kb on - strand, within EX28DRAFT_2353 at 2375.101 kb on + strand, within EX28DRAFT_2353 at 2375.101 kb on + strand, within EX28DRAFT_2353 at 2375.102 kb on - strand, within EX28DRAFT_2353 at 2375.102 kb on - strand, within EX28DRAFT_2353 at 2375.102 kb on - strand, within EX28DRAFT_2353 at 2375.193 kb on + strand at 2375.262 kb on + strand at 2375.269 kb on + strand at 2375.269 kb on + strand at 2375.270 kb on - strand at 2375.319 kb on + strand at 2375.334 kb on + strand at 2375.334 kb on + strand at 2375.453 kb on + strand, within EX28DRAFT_2354 at 2375.610 kb on - strand, within EX28DRAFT_2354 at 2375.610 kb on - strand, within EX28DRAFT_2354 at 2375.846 kb on + strand, within EX28DRAFT_2354 at 2375.846 kb on + strand, within EX28DRAFT_2354 at 2375.847 kb on - strand, within EX28DRAFT_2354 at 2375.878 kb on + strand, within EX28DRAFT_2354 at 2375.929 kb on + strand at 2375.930 kb on - strand at 2375.939 kb on - strand at 2376.193 kb on + strand, within EX28DRAFT_2355 at 2376.297 kb on + strand, within EX28DRAFT_2355 at 2376.409 kb on + strand, within EX28DRAFT_2355 at 2376.429 kb on - strand, within EX28DRAFT_2355 at 2376.682 kb on + strand at 2376.798 kb on - strand, within EX28DRAFT_2356 at 2376.954 kb on + strand, within EX28DRAFT_2356
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,374,532 + EX28DRAFT_2353 0.39 -0.3 2,374,532 + EX28DRAFT_2353 0.39 +0.4 2,374,653 - EX28DRAFT_2353 0.49 -0.2 2,374,862 + EX28DRAFT_2353 0.67 +0.2 2,374,863 - EX28DRAFT_2353 0.67 +0.2 2,374,871 + EX28DRAFT_2353 0.68 +0.1 2,374,932 - EX28DRAFT_2353 0.73 +0.8 2,374,962 + EX28DRAFT_2353 0.76 -0.1 2,374,963 - EX28DRAFT_2353 0.76 +0.1 2,375,085 - EX28DRAFT_2353 0.86 +0.4 2,375,101 + EX28DRAFT_2353 0.88 +0.9 2,375,101 + EX28DRAFT_2353 0.88 +0.1 2,375,102 - EX28DRAFT_2353 0.88 -1.6 2,375,102 - EX28DRAFT_2353 0.88 +0.5 2,375,102 - EX28DRAFT_2353 0.88 +0.2 2,375,193 + -2.4 2,375,262 + +1.1 2,375,269 + +0.3 2,375,269 + -2.1 2,375,270 - +0.0 2,375,319 + +0.1 2,375,334 + +0.4 2,375,334 + +0.1 2,375,453 + EX28DRAFT_2354 0.14 +0.1 2,375,610 - EX28DRAFT_2354 0.40 -0.3 2,375,610 - EX28DRAFT_2354 0.40 +0.5 2,375,846 + EX28DRAFT_2354 0.78 +0.4 2,375,846 + EX28DRAFT_2354 0.78 +0.5 2,375,847 - EX28DRAFT_2354 0.78 +0.7 2,375,878 + EX28DRAFT_2354 0.83 +0.4 2,375,929 + -0.7 2,375,930 - -0.1 2,375,939 - -1.8 2,376,193 + EX28DRAFT_2355 0.31 +0.8 2,376,297 + EX28DRAFT_2355 0.46 -0.5 2,376,409 + EX28DRAFT_2355 0.62 +0.2 2,376,429 - EX28DRAFT_2355 0.65 +0.4 2,376,682 + +0.1 2,376,798 - EX28DRAFT_2356 0.25 +0.2 2,376,954 + EX28DRAFT_2356 0.53 +0.4
Or see this region's nucleotide sequence