Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2354

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2353 and EX28DRAFT_2354 are separated by 122 nucleotidesEX28DRAFT_2354 and EX28DRAFT_2355 overlap by 4 nucleotidesEX28DRAFT_2355 and EX28DRAFT_2356 overlap by 4 nucleotides EX28DRAFT_2353: EX28DRAFT_2353 - Aspartate/tyrosine/aromatic aminotransferase, at 2,374,084 to 2,375,244 _2353 EX28DRAFT_2354: EX28DRAFT_2354 - methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,375,367 to 2,375,981 _2354 EX28DRAFT_2355: EX28DRAFT_2355 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 2,375,978 to 2,376,667 _2355 EX28DRAFT_2356: EX28DRAFT_2356 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,376,664 to 2,377,206 _2356 Position (kb) 2375 2376Strain fitness (log2 ratio) -2 -1 0 1at 2374.532 kb on + strand, within EX28DRAFT_2353at 2374.532 kb on + strand, within EX28DRAFT_2353at 2374.653 kb on - strand, within EX28DRAFT_2353at 2374.862 kb on + strand, within EX28DRAFT_2353at 2374.863 kb on - strand, within EX28DRAFT_2353at 2374.871 kb on + strand, within EX28DRAFT_2353at 2374.932 kb on - strand, within EX28DRAFT_2353at 2374.962 kb on + strand, within EX28DRAFT_2353at 2374.963 kb on - strand, within EX28DRAFT_2353at 2375.085 kb on - strand, within EX28DRAFT_2353at 2375.101 kb on + strand, within EX28DRAFT_2353at 2375.101 kb on + strand, within EX28DRAFT_2353at 2375.102 kb on - strand, within EX28DRAFT_2353at 2375.102 kb on - strand, within EX28DRAFT_2353at 2375.102 kb on - strand, within EX28DRAFT_2353at 2375.193 kb on + strandat 2375.262 kb on + strandat 2375.269 kb on + strandat 2375.269 kb on + strandat 2375.270 kb on - strandat 2375.319 kb on + strandat 2375.334 kb on + strandat 2375.334 kb on + strandat 2375.453 kb on + strand, within EX28DRAFT_2354at 2375.610 kb on - strand, within EX28DRAFT_2354at 2375.610 kb on - strand, within EX28DRAFT_2354at 2375.846 kb on + strand, within EX28DRAFT_2354at 2375.846 kb on + strand, within EX28DRAFT_2354at 2375.847 kb on - strand, within EX28DRAFT_2354at 2375.878 kb on + strand, within EX28DRAFT_2354at 2375.929 kb on + strandat 2375.930 kb on - strandat 2375.939 kb on - strandat 2376.193 kb on + strand, within EX28DRAFT_2355at 2376.297 kb on + strand, within EX28DRAFT_2355at 2376.409 kb on + strand, within EX28DRAFT_2355at 2376.429 kb on - strand, within EX28DRAFT_2355at 2376.682 kb on + strandat 2376.798 kb on - strand, within EX28DRAFT_2356at 2376.954 kb on + strand, within EX28DRAFT_2356

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,374,532 + EX28DRAFT_2353 0.39 -0.3
2,374,532 + EX28DRAFT_2353 0.39 +0.4
2,374,653 - EX28DRAFT_2353 0.49 -0.2
2,374,862 + EX28DRAFT_2353 0.67 +0.2
2,374,863 - EX28DRAFT_2353 0.67 +0.2
2,374,871 + EX28DRAFT_2353 0.68 +0.1
2,374,932 - EX28DRAFT_2353 0.73 +0.8
2,374,962 + EX28DRAFT_2353 0.76 -0.1
2,374,963 - EX28DRAFT_2353 0.76 +0.1
2,375,085 - EX28DRAFT_2353 0.86 +0.4
2,375,101 + EX28DRAFT_2353 0.88 +0.9
2,375,101 + EX28DRAFT_2353 0.88 +0.1
2,375,102 - EX28DRAFT_2353 0.88 -1.6
2,375,102 - EX28DRAFT_2353 0.88 +0.5
2,375,102 - EX28DRAFT_2353 0.88 +0.2
2,375,193 + -2.4
2,375,262 + +1.1
2,375,269 + +0.3
2,375,269 + -2.1
2,375,270 - +0.0
2,375,319 + +0.1
2,375,334 + +0.4
2,375,334 + +0.1
2,375,453 + EX28DRAFT_2354 0.14 +0.1
2,375,610 - EX28DRAFT_2354 0.40 -0.3
2,375,610 - EX28DRAFT_2354 0.40 +0.5
2,375,846 + EX28DRAFT_2354 0.78 +0.4
2,375,846 + EX28DRAFT_2354 0.78 +0.5
2,375,847 - EX28DRAFT_2354 0.78 +0.7
2,375,878 + EX28DRAFT_2354 0.83 +0.4
2,375,929 + -0.7
2,375,930 - -0.1
2,375,939 - -1.8
2,376,193 + EX28DRAFT_2355 0.31 +0.8
2,376,297 + EX28DRAFT_2355 0.46 -0.5
2,376,409 + EX28DRAFT_2355 0.62 +0.2
2,376,429 - EX28DRAFT_2355 0.65 +0.4
2,376,682 + +0.1
2,376,798 - EX28DRAFT_2356 0.25 +0.2
2,376,954 + EX28DRAFT_2356 0.53 +0.4

Or see this region's nucleotide sequence