Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2296

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2295 and EX28DRAFT_2296 are separated by 169 nucleotidesEX28DRAFT_2296 and EX28DRAFT_2297 are separated by 370 nucleotides EX28DRAFT_2295: EX28DRAFT_2295 - glutaminyl-tRNA synthetase (EC 6.1.1.18), at 2,322,583 to 2,324,250 _2295 EX28DRAFT_2296: EX28DRAFT_2296 - PTS system, N-acetylglucosamine-specific IIBC component, at 2,324,420 to 2,326,399 _2296 EX28DRAFT_2297: EX28DRAFT_2297 - glucosamine-6-phosphate isomerase, at 2,326,770 to 2,327,570 _2297 Position (kb) 2324 2325 2326 2327Strain fitness (log2 ratio) -1 0 1 2at 2324.297 kb on - strandat 2324.297 kb on - strandat 2324.431 kb on + strandat 2324.440 kb on - strandat 2324.528 kb on + strandat 2324.624 kb on - strand, within EX28DRAFT_2296at 2325.219 kb on - strand, within EX28DRAFT_2296at 2325.299 kb on - strand, within EX28DRAFT_2296at 2325.318 kb on + strand, within EX28DRAFT_2296at 2325.318 kb on + strand, within EX28DRAFT_2296at 2325.318 kb on + strand, within EX28DRAFT_2296at 2325.318 kb on + strand, within EX28DRAFT_2296at 2325.319 kb on - strand, within EX28DRAFT_2296at 2325.319 kb on - strand, within EX28DRAFT_2296at 2325.319 kb on - strand, within EX28DRAFT_2296at 2325.496 kb on - strand, within EX28DRAFT_2296at 2325.624 kb on + strand, within EX28DRAFT_2296at 2325.624 kb on + strand, within EX28DRAFT_2296at 2325.625 kb on - strand, within EX28DRAFT_2296at 2325.631 kb on - strand, within EX28DRAFT_2296at 2325.924 kb on + strand, within EX28DRAFT_2296at 2325.924 kb on + strand, within EX28DRAFT_2296at 2325.924 kb on + strand, within EX28DRAFT_2296at 2325.924 kb on + strand, within EX28DRAFT_2296at 2325.924 kb on + strand, within EX28DRAFT_2296at 2325.925 kb on - strand, within EX28DRAFT_2296at 2325.925 kb on - strand, within EX28DRAFT_2296at 2325.925 kb on - strand, within EX28DRAFT_2296at 2326.038 kb on + strand, within EX28DRAFT_2296at 2326.038 kb on + strand, within EX28DRAFT_2296at 2326.139 kb on - strand, within EX28DRAFT_2296at 2326.139 kb on - strand, within EX28DRAFT_2296at 2326.294 kb on + strandat 2326.318 kb on + strandat 2326.318 kb on + strandat 2326.322 kb on - strandat 2326.493 kb on + strandat 2326.511 kb on - strandat 2326.511 kb on - strandat 2326.514 kb on + strandat 2326.628 kb on + strandat 2326.629 kb on - strandat 2326.629 kb on - strandat 2326.629 kb on - strandat 2326.705 kb on - strandat 2326.710 kb on + strandat 2326.710 kb on + strandat 2326.714 kb on + strandat 2326.715 kb on - strandat 2326.747 kb on + strandat 2326.748 kb on - strandat 2326.838 kb on + strandat 2326.937 kb on + strand, within EX28DRAFT_2297at 2326.989 kb on + strand, within EX28DRAFT_2297at 2326.989 kb on + strand, within EX28DRAFT_2297at 2326.990 kb on - strand, within EX28DRAFT_2297at 2327.022 kb on + strand, within EX28DRAFT_2297at 2327.023 kb on - strand, within EX28DRAFT_2297at 2327.023 kb on - strand, within EX28DRAFT_2297at 2327.034 kb on - strand, within EX28DRAFT_2297at 2327.131 kb on - strand, within EX28DRAFT_2297at 2327.182 kb on + strand, within EX28DRAFT_2297at 2327.183 kb on - strand, within EX28DRAFT_2297at 2327.319 kb on + strand, within EX28DRAFT_2297

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
2,324,297 - +1.7
2,324,297 - +0.5
2,324,431 + -0.2
2,324,440 - +0.1
2,324,528 + +0.1
2,324,624 - EX28DRAFT_2296 0.10 +0.2
2,325,219 - EX28DRAFT_2296 0.40 +0.7
2,325,299 - EX28DRAFT_2296 0.44 -0.4
2,325,318 + EX28DRAFT_2296 0.45 -0.3
2,325,318 + EX28DRAFT_2296 0.45 +0.6
2,325,318 + EX28DRAFT_2296 0.45 +0.2
2,325,318 + EX28DRAFT_2296 0.45 +0.4
2,325,319 - EX28DRAFT_2296 0.45 +2.3
2,325,319 - EX28DRAFT_2296 0.45 +0.1
2,325,319 - EX28DRAFT_2296 0.45 -0.4
2,325,496 - EX28DRAFT_2296 0.54 -0.2
2,325,624 + EX28DRAFT_2296 0.61 -0.2
2,325,624 + EX28DRAFT_2296 0.61 +1.0
2,325,625 - EX28DRAFT_2296 0.61 +0.3
2,325,631 - EX28DRAFT_2296 0.61 +0.0
2,325,924 + EX28DRAFT_2296 0.76 -0.0
2,325,924 + EX28DRAFT_2296 0.76 -0.2
2,325,924 + EX28DRAFT_2296 0.76 +1.1
2,325,924 + EX28DRAFT_2296 0.76 -0.4
2,325,924 + EX28DRAFT_2296 0.76 -0.4
2,325,925 - EX28DRAFT_2296 0.76 +0.6
2,325,925 - EX28DRAFT_2296 0.76 +0.1
2,325,925 - EX28DRAFT_2296 0.76 +0.6
2,326,038 + EX28DRAFT_2296 0.82 +2.6
2,326,038 + EX28DRAFT_2296 0.82 -0.7
2,326,139 - EX28DRAFT_2296 0.87 +0.4
2,326,139 - EX28DRAFT_2296 0.87 -0.4
2,326,294 + -0.0
2,326,318 + +0.1
2,326,318 + -0.3
2,326,322 - -0.3
2,326,493 + +0.2
2,326,511 - -0.9
2,326,511 - +0.1
2,326,514 + +0.3
2,326,628 + +0.7
2,326,629 - +0.3
2,326,629 - -1.4
2,326,629 - +0.2
2,326,705 - -0.0
2,326,710 + +0.9
2,326,710 + -0.2
2,326,714 + +0.2
2,326,715 - -0.4
2,326,747 + -0.3
2,326,748 - -0.3
2,326,838 + -0.2
2,326,937 + EX28DRAFT_2297 0.21 +0.2
2,326,989 + EX28DRAFT_2297 0.27 -0.1
2,326,989 + EX28DRAFT_2297 0.27 -0.8
2,326,990 - EX28DRAFT_2297 0.27 -0.0
2,327,022 + EX28DRAFT_2297 0.31 +0.2
2,327,023 - EX28DRAFT_2297 0.32 +0.4
2,327,023 - EX28DRAFT_2297 0.32 -0.0
2,327,034 - EX28DRAFT_2297 0.33 +0.1
2,327,131 - EX28DRAFT_2297 0.45 +0.5
2,327,182 + EX28DRAFT_2297 0.51 +0.7
2,327,183 - EX28DRAFT_2297 0.52 +0.2
2,327,319 + EX28DRAFT_2297 0.69 +0.2

Or see this region's nucleotide sequence