Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2132 and EX28DRAFT_2133 are separated by 1 nucleotides EX28DRAFT_2133 and EX28DRAFT_2134 are separated by 5 nucleotides
EX28DRAFT_2132: EX28DRAFT_2132 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,150,784 to 2,151,695
_2132
EX28DRAFT_2133: EX28DRAFT_2133 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,151,697 to 2,152,617
_2133
EX28DRAFT_2134: EX28DRAFT_2134 - ABC-type dipeptide transport system, periplasmic component, at 2,152,623 to 2,154,161
_2134
Position (kb)
2151
2152
2153 Strain fitness (log2 ratio)
-1
0
1 at 2150.765 kb on - strand at 2150.780 kb on - strand at 2150.786 kb on - strand at 2150.838 kb on - strand at 2150.903 kb on + strand, within EX28DRAFT_2132 at 2150.994 kb on - strand, within EX28DRAFT_2132 at 2150.994 kb on - strand, within EX28DRAFT_2132 at 2151.311 kb on - strand, within EX28DRAFT_2132 at 2151.493 kb on + strand, within EX28DRAFT_2132 at 2151.545 kb on + strand, within EX28DRAFT_2132 at 2151.698 kb on + strand at 2151.698 kb on + strand at 2151.699 kb on - strand at 2151.699 kb on - strand at 2151.699 kb on - strand at 2151.699 kb on - strand at 2151.704 kb on + strand at 2151.705 kb on - strand at 2151.749 kb on - strand at 2151.762 kb on + strand at 2151.762 kb on + strand at 2152.005 kb on + strand, within EX28DRAFT_2133 at 2152.006 kb on - strand, within EX28DRAFT_2133 at 2152.006 kb on - strand, within EX28DRAFT_2133 at 2152.007 kb on + strand, within EX28DRAFT_2133 at 2152.100 kb on + strand, within EX28DRAFT_2133 at 2152.100 kb on + strand, within EX28DRAFT_2133 at 2152.100 kb on + strand, within EX28DRAFT_2133 at 2152.101 kb on - strand, within EX28DRAFT_2133 at 2152.101 kb on - strand, within EX28DRAFT_2133 at 2152.413 kb on + strand, within EX28DRAFT_2133 at 2152.414 kb on - strand, within EX28DRAFT_2133 at 2152.414 kb on - strand, within EX28DRAFT_2133 at 2152.414 kb on - strand, within EX28DRAFT_2133 at 2152.415 kb on + strand, within EX28DRAFT_2133 at 2152.416 kb on - strand, within EX28DRAFT_2133 at 2152.431 kb on + strand, within EX28DRAFT_2133 at 2152.432 kb on - strand, within EX28DRAFT_2133 at 2152.432 kb on - strand, within EX28DRAFT_2133 at 2152.432 kb on - strand, within EX28DRAFT_2133 at 2152.432 kb on - strand, within EX28DRAFT_2133 at 2152.433 kb on + strand, within EX28DRAFT_2133 at 2152.433 kb on + strand, within EX28DRAFT_2133 at 2152.433 kb on + strand, within EX28DRAFT_2133 at 2152.434 kb on - strand, within EX28DRAFT_2133 at 2152.434 kb on - strand, within EX28DRAFT_2133 at 2152.533 kb on + strand at 2152.534 kb on - strand at 2152.607 kb on + strand at 2152.608 kb on - strand at 2152.625 kb on - strand at 2152.649 kb on + strand at 2152.650 kb on - strand at 2152.672 kb on + strand at 2152.673 kb on - strand at 2152.673 kb on - strand at 2152.673 kb on - strand at 2152.673 kb on - strand at 2152.673 kb on - strand at 2152.752 kb on - strand at 2152.755 kb on - strand at 2152.946 kb on - strand, within EX28DRAFT_2134 at 2153.097 kb on - strand, within EX28DRAFT_2134 at 2153.245 kb on + strand, within EX28DRAFT_2134 at 2153.289 kb on + strand, within EX28DRAFT_2134 at 2153.290 kb on + strand, within EX28DRAFT_2134 at 2153.290 kb on + strand, within EX28DRAFT_2134 at 2153.291 kb on - strand, within EX28DRAFT_2134 at 2153.353 kb on + strand, within EX28DRAFT_2134
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,150,765 - +0.7 2,150,780 - +1.5 2,150,786 - +0.6 2,150,838 - +0.5 2,150,903 + EX28DRAFT_2132 0.13 +0.7 2,150,994 - EX28DRAFT_2132 0.23 -1.6 2,150,994 - EX28DRAFT_2132 0.23 +0.6 2,151,311 - EX28DRAFT_2132 0.58 +1.0 2,151,493 + EX28DRAFT_2132 0.78 -0.1 2,151,545 + EX28DRAFT_2132 0.83 -0.1 2,151,698 + +0.0 2,151,698 + +1.3 2,151,699 - -0.4 2,151,699 - +0.2 2,151,699 - -0.1 2,151,699 - -0.1 2,151,704 + -0.5 2,151,705 - -0.8 2,151,749 - -0.2 2,151,762 + -0.6 2,151,762 + +0.1 2,152,005 + EX28DRAFT_2133 0.33 -0.2 2,152,006 - EX28DRAFT_2133 0.34 -0.3 2,152,006 - EX28DRAFT_2133 0.34 +0.2 2,152,007 + EX28DRAFT_2133 0.34 -0.5 2,152,100 + EX28DRAFT_2133 0.44 +0.5 2,152,100 + EX28DRAFT_2133 0.44 -1.1 2,152,100 + EX28DRAFT_2133 0.44 -0.9 2,152,101 - EX28DRAFT_2133 0.44 -0.3 2,152,101 - EX28DRAFT_2133 0.44 -1.1 2,152,413 + EX28DRAFT_2133 0.78 -0.1 2,152,414 - EX28DRAFT_2133 0.78 +0.0 2,152,414 - EX28DRAFT_2133 0.78 +0.2 2,152,414 - EX28DRAFT_2133 0.78 -0.1 2,152,415 + EX28DRAFT_2133 0.78 +0.0 2,152,416 - EX28DRAFT_2133 0.78 -0.6 2,152,431 + EX28DRAFT_2133 0.80 -0.1 2,152,432 - EX28DRAFT_2133 0.80 -1.0 2,152,432 - EX28DRAFT_2133 0.80 -0.1 2,152,432 - EX28DRAFT_2133 0.80 -0.1 2,152,432 - EX28DRAFT_2133 0.80 +0.5 2,152,433 + EX28DRAFT_2133 0.80 -0.1 2,152,433 + EX28DRAFT_2133 0.80 +0.2 2,152,433 + EX28DRAFT_2133 0.80 -0.6 2,152,434 - EX28DRAFT_2133 0.80 -0.0 2,152,434 - EX28DRAFT_2133 0.80 -0.5 2,152,533 + +0.5 2,152,534 - -0.5 2,152,607 + -0.2 2,152,608 - +0.1 2,152,625 - -0.1 2,152,649 + -0.9 2,152,650 - +0.2 2,152,672 + -0.3 2,152,673 - +0.4 2,152,673 - +0.4 2,152,673 - +0.1 2,152,673 - +0.1 2,152,673 - +1.1 2,152,752 - +0.7 2,152,755 - +0.2 2,152,946 - EX28DRAFT_2134 0.21 +1.0 2,153,097 - EX28DRAFT_2134 0.31 +0.3 2,153,245 + EX28DRAFT_2134 0.40 -0.1 2,153,289 + EX28DRAFT_2134 0.43 -0.0 2,153,290 + EX28DRAFT_2134 0.43 +0.1 2,153,290 + EX28DRAFT_2134 0.43 -0.5 2,153,291 - EX28DRAFT_2134 0.43 +0.3 2,153,353 + EX28DRAFT_2134 0.47 -0.8
Or see this region's nucleotide sequence