Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2099 and EX28DRAFT_2100 are separated by 351 nucleotides EX28DRAFT_2100 and EX28DRAFT_2101 are separated by 63 nucleotides EX28DRAFT_2101 and EX28DRAFT_2102 are separated by 48 nucleotides EX28DRAFT_2102 and EX28DRAFT_2103 are separated by 184 nucleotides
EX28DRAFT_2099: EX28DRAFT_2099 - Spermidine/putrescine-binding periplasmic protein, at 2,122,941 to 2,124,053
_2099
EX28DRAFT_2100: EX28DRAFT_2100 - Putative bacterial sensory transduction regulator, at 2,124,405 to 2,124,881
_2100
EX28DRAFT_2101: EX28DRAFT_2101 - alpha-L-glutamate ligase, RimK family, at 2,124,945 to 2,125,868
_2101
EX28DRAFT_2102: EX28DRAFT_2102 - Nitroreductase, at 2,125,917 to 2,126,639
_2102
EX28DRAFT_2103: EX28DRAFT_2103 - Glutaredoxin, GrxA family, at 2,126,824 to 2,127,093
_2103
Position (kb)
2124
2125
2126 Strain fitness (log2 ratio)
-1
0
1 at 2124.038 kb on + strand at 2124.054 kb on - strand at 2124.060 kb on - strand at 2124.112 kb on + strand at 2124.146 kb on + strand at 2124.208 kb on + strand at 2124.209 kb on - strand at 2124.209 kb on - strand at 2124.277 kb on + strand at 2124.277 kb on + strand at 2124.461 kb on - strand, within EX28DRAFT_2100 at 2124.610 kb on - strand, within EX28DRAFT_2100 at 2124.774 kb on - strand, within EX28DRAFT_2100 at 2124.774 kb on - strand, within EX28DRAFT_2100 at 2124.818 kb on + strand, within EX28DRAFT_2100 at 2124.846 kb on + strand at 2124.847 kb on - strand at 2124.860 kb on + strand at 2124.861 kb on - strand at 2124.864 kb on + strand at 2124.865 kb on - strand at 2124.901 kb on + strand at 2124.903 kb on + strand at 2124.903 kb on + strand at 2124.903 kb on + strand at 2124.904 kb on - strand at 2124.904 kb on - strand at 2124.904 kb on - strand at 2124.914 kb on + strand at 2124.915 kb on - strand at 2124.915 kb on - strand at 2125.107 kb on + strand, within EX28DRAFT_2101 at 2125.176 kb on - strand, within EX28DRAFT_2101 at 2125.211 kb on + strand, within EX28DRAFT_2101 at 2125.312 kb on + strand, within EX28DRAFT_2101 at 2125.312 kb on + strand, within EX28DRAFT_2101 at 2125.313 kb on - strand, within EX28DRAFT_2101 at 2125.313 kb on - strand, within EX28DRAFT_2101 at 2125.568 kb on + strand, within EX28DRAFT_2101 at 2125.633 kb on + strand, within EX28DRAFT_2101 at 2125.637 kb on - strand, within EX28DRAFT_2101 at 2125.734 kb on - strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.834 kb on - strand at 2125.888 kb on + strand at 2125.889 kb on - strand at 2125.891 kb on - strand at 2125.891 kb on - strand at 2125.948 kb on + strand at 2125.948 kb on + strand at 2125.959 kb on - strand at 2126.045 kb on - strand, within EX28DRAFT_2102 at 2126.241 kb on - strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.258 kb on - strand, within EX28DRAFT_2102 at 2126.546 kb on + strand, within EX28DRAFT_2102 at 2126.625 kb on + strand at 2126.682 kb on + strand at 2126.683 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.718 kb on - strand at 2126.718 kb on - strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.724 kb on - strand at 2126.728 kb on + strand at 2126.779 kb on + strand at 2126.779 kb on + strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.781 kb on + strand at 2126.781 kb on + strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.788 kb on + strand at 2126.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,124,038 + +0.1 2,124,054 - +0.1 2,124,060 - -0.2 2,124,112 + +0.2 2,124,146 + +0.1 2,124,208 + +0.0 2,124,209 - +0.1 2,124,209 - -0.4 2,124,277 + -0.1 2,124,277 + +0.6 2,124,461 - EX28DRAFT_2100 0.12 -0.1 2,124,610 - EX28DRAFT_2100 0.43 +0.2 2,124,774 - EX28DRAFT_2100 0.77 +0.5 2,124,774 - EX28DRAFT_2100 0.77 +0.1 2,124,818 + EX28DRAFT_2100 0.87 +0.0 2,124,846 + +0.7 2,124,847 - -0.2 2,124,860 + -0.0 2,124,861 - -0.0 2,124,864 + -0.3 2,124,865 - -0.4 2,124,901 + +0.2 2,124,903 + +0.8 2,124,903 + +0.4 2,124,903 + +0.1 2,124,904 - +0.2 2,124,904 - +0.7 2,124,904 - +0.1 2,124,914 + +0.2 2,124,915 - +0.5 2,124,915 - -0.5 2,125,107 + EX28DRAFT_2101 0.18 -0.2 2,125,176 - EX28DRAFT_2101 0.25 +0.5 2,125,211 + EX28DRAFT_2101 0.29 -0.2 2,125,312 + EX28DRAFT_2101 0.40 +0.1 2,125,312 + EX28DRAFT_2101 0.40 +1.2 2,125,313 - EX28DRAFT_2101 0.40 +0.0 2,125,313 - EX28DRAFT_2101 0.40 +0.7 2,125,568 + EX28DRAFT_2101 0.67 +0.9 2,125,633 + EX28DRAFT_2101 0.74 +0.3 2,125,637 - EX28DRAFT_2101 0.75 +0.8 2,125,734 - EX28DRAFT_2101 0.85 +0.5 2,125,735 + EX28DRAFT_2101 0.85 -0.1 2,125,735 + EX28DRAFT_2101 0.85 -0.0 2,125,735 + EX28DRAFT_2101 0.85 +0.0 2,125,735 + EX28DRAFT_2101 0.85 -0.3 2,125,735 + EX28DRAFT_2101 0.85 +0.1 2,125,736 - EX28DRAFT_2101 0.86 -0.1 2,125,736 - EX28DRAFT_2101 0.86 -0.3 2,125,736 - EX28DRAFT_2101 0.86 +0.1 2,125,834 - +0.2 2,125,888 + +0.3 2,125,889 - +0.2 2,125,891 - -0.0 2,125,891 - -0.2 2,125,948 + -0.3 2,125,948 + +0.0 2,125,959 - -1.2 2,126,045 - EX28DRAFT_2102 0.18 -0.2 2,126,241 - EX28DRAFT_2102 0.45 -0.2 2,126,257 + EX28DRAFT_2102 0.47 +0.5 2,126,257 + EX28DRAFT_2102 0.47 -0.2 2,126,258 - EX28DRAFT_2102 0.47 +0.1 2,126,546 + EX28DRAFT_2102 0.87 -0.3 2,126,625 + +0.4 2,126,682 + -0.2 2,126,683 - -0.2 2,126,704 - -0.1 2,126,704 - +0.0 2,126,704 - +1.3 2,126,718 - -0.9 2,126,718 - -0.9 2,126,723 + +0.4 2,126,723 + -0.2 2,126,723 + +0.4 2,126,724 - -0.6 2,126,728 + +0.0 2,126,779 + +0.2 2,126,779 + +0.1 2,126,780 - -0.4 2,126,780 - -0.3 2,126,780 - +0.5 2,126,781 + +0.0 2,126,781 + +0.4 2,126,782 - +0.4 2,126,782 - +0.3 2,126,782 - +1.2 2,126,782 - -0.8 2,126,788 + +0.3 2,126,789 - -0.4
Or see this region's nucleotide sequence