Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2050 and EX28DRAFT_2051 are separated by 27 nucleotides EX28DRAFT_2051 and EX28DRAFT_2052 are separated by 267 nucleotides EX28DRAFT_2052 and EX28DRAFT_2053 are separated by 70 nucleotides
EX28DRAFT_2050: EX28DRAFT_2050 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 2,070,314 to 2,072,593
_2050
EX28DRAFT_2051: EX28DRAFT_2051 - Uncharacterized conserved protein, at 2,072,621 to 2,072,941
_2051
EX28DRAFT_2052: EX28DRAFT_2052 - cold shock domain protein CspD, at 2,073,209 to 2,073,430
_2052
EX28DRAFT_2053: EX28DRAFT_2053 - ABC-type antimicrobial peptide transport system, ATPase component, at 2,073,501 to 2,075,441
_2053
Position (kb)
2073
2074 Strain fitness (log2 ratio)
-1
0
1 at 2072.230 kb on - strand, within EX28DRAFT_2050 at 2072.489 kb on - strand at 2072.504 kb on + strand at 2072.521 kb on + strand at 2072.522 kb on - strand at 2072.564 kb on + strand at 2072.612 kb on + strand at 2072.620 kb on - strand at 2072.688 kb on - strand, within EX28DRAFT_2051 at 2072.713 kb on + strand, within EX28DRAFT_2051 at 2072.714 kb on - strand, within EX28DRAFT_2051 at 2072.742 kb on + strand, within EX28DRAFT_2051 at 2072.777 kb on + strand, within EX28DRAFT_2051 at 2072.778 kb on - strand, within EX28DRAFT_2051 at 2072.778 kb on - strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.784 kb on + strand, within EX28DRAFT_2051 at 2072.785 kb on - strand, within EX28DRAFT_2051 at 2072.802 kb on - strand, within EX28DRAFT_2051 at 2072.851 kb on + strand, within EX28DRAFT_2051 at 2072.852 kb on - strand, within EX28DRAFT_2051 at 2072.859 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.863 kb on + strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.864 kb on - strand, within EX28DRAFT_2051 at 2072.893 kb on + strand, within EX28DRAFT_2051 at 2072.936 kb on - strand at 2072.943 kb on - strand at 2072.964 kb on - strand at 2072.976 kb on - strand at 2072.979 kb on + strand at 2072.979 kb on + strand at 2072.980 kb on - strand at 2072.990 kb on + strand at 2072.990 kb on + strand at 2072.990 kb on + strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.991 kb on - strand at 2072.994 kb on - strand at 2073.031 kb on - strand at 2073.060 kb on + strand at 2073.177 kb on + strand at 2073.177 kb on + strand at 2073.178 kb on - strand at 2073.178 kb on - strand at 2073.178 kb on - strand at 2073.182 kb on + strand at 2073.182 kb on + strand at 2073.183 kb on - strand at 2073.191 kb on + strand at 2073.227 kb on - strand at 2073.227 kb on - strand at 2073.300 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.364 kb on - strand, within EX28DRAFT_2052 at 2073.397 kb on - strand, within EX28DRAFT_2052 at 2073.397 kb on - strand, within EX28DRAFT_2052 at 2073.428 kb on + strand at 2073.441 kb on + strand at 2073.442 kb on - strand at 2073.448 kb on + strand at 2073.449 kb on - strand at 2073.822 kb on - strand, within EX28DRAFT_2053 at 2073.890 kb on + strand, within EX28DRAFT_2053 at 2073.891 kb on - strand, within EX28DRAFT_2053 at 2073.891 kb on - strand, within EX28DRAFT_2053 at 2074.059 kb on - strand, within EX28DRAFT_2053 at 2074.121 kb on + strand, within EX28DRAFT_2053 at 2074.121 kb on + strand, within EX28DRAFT_2053 at 2074.122 kb on - strand, within EX28DRAFT_2053 at 2074.321 kb on + strand, within EX28DRAFT_2053 at 2074.322 kb on - strand, within EX28DRAFT_2053
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,072,230 - EX28DRAFT_2050 0.84 +0.3 2,072,489 - -0.0 2,072,504 + -0.2 2,072,521 + +0.8 2,072,522 - +0.1 2,072,564 + +0.6 2,072,612 + -0.8 2,072,620 - -0.1 2,072,688 - EX28DRAFT_2051 0.21 +1.1 2,072,713 + EX28DRAFT_2051 0.29 -1.4 2,072,714 - EX28DRAFT_2051 0.29 -0.5 2,072,742 + EX28DRAFT_2051 0.38 +0.4 2,072,777 + EX28DRAFT_2051 0.49 +0.4 2,072,778 - EX28DRAFT_2051 0.49 +0.1 2,072,778 - EX28DRAFT_2051 0.49 +1.4 2,072,784 + EX28DRAFT_2051 0.51 +1.1 2,072,784 + EX28DRAFT_2051 0.51 +0.9 2,072,784 + EX28DRAFT_2051 0.51 -1.0 2,072,785 - EX28DRAFT_2051 0.51 +0.4 2,072,802 - EX28DRAFT_2051 0.56 +0.2 2,072,851 + EX28DRAFT_2051 0.72 +0.7 2,072,852 - EX28DRAFT_2051 0.72 +0.6 2,072,859 + EX28DRAFT_2051 0.74 -0.5 2,072,863 + EX28DRAFT_2051 0.75 +1.2 2,072,863 + EX28DRAFT_2051 0.75 -0.3 2,072,863 + EX28DRAFT_2051 0.75 +1.2 2,072,863 + EX28DRAFT_2051 0.75 -0.3 2,072,863 + EX28DRAFT_2051 0.75 -0.5 2,072,863 + EX28DRAFT_2051 0.75 -0.4 2,072,864 - EX28DRAFT_2051 0.76 -0.6 2,072,864 - EX28DRAFT_2051 0.76 +0.7 2,072,864 - EX28DRAFT_2051 0.76 -0.1 2,072,864 - EX28DRAFT_2051 0.76 +0.1 2,072,864 - EX28DRAFT_2051 0.76 -0.5 2,072,864 - EX28DRAFT_2051 0.76 -0.7 2,072,864 - EX28DRAFT_2051 0.76 -0.3 2,072,893 + EX28DRAFT_2051 0.85 -0.4 2,072,936 - -0.2 2,072,943 - -0.5 2,072,964 - -0.3 2,072,976 - +0.2 2,072,979 + -0.0 2,072,979 + -0.5 2,072,980 - +0.7 2,072,990 + -0.4 2,072,990 + +0.5 2,072,990 + +0.3 2,072,991 - -0.0 2,072,991 - +0.0 2,072,991 - -0.1 2,072,991 - +1.1 2,072,994 - -1.1 2,073,031 - +0.7 2,073,060 + -0.1 2,073,177 + +0.0 2,073,177 + -0.2 2,073,178 - -0.7 2,073,178 - +0.0 2,073,178 - -0.2 2,073,182 + +0.2 2,073,182 + +1.3 2,073,183 - -0.1 2,073,191 + +1.0 2,073,227 - -0.4 2,073,227 - +0.6 2,073,300 - EX28DRAFT_2052 0.41 +0.1 2,073,364 - EX28DRAFT_2052 0.70 -0.2 2,073,364 - EX28DRAFT_2052 0.70 -0.2 2,073,364 - EX28DRAFT_2052 0.70 +0.2 2,073,364 - EX28DRAFT_2052 0.70 -0.3 2,073,364 - EX28DRAFT_2052 0.70 +0.4 2,073,364 - EX28DRAFT_2052 0.70 -0.4 2,073,397 - EX28DRAFT_2052 0.85 -0.6 2,073,397 - EX28DRAFT_2052 0.85 -0.4 2,073,428 + +1.6 2,073,441 + +0.3 2,073,442 - +0.2 2,073,448 + +0.1 2,073,449 - -0.1 2,073,822 - EX28DRAFT_2053 0.17 -0.1 2,073,890 + EX28DRAFT_2053 0.20 +0.3 2,073,891 - EX28DRAFT_2053 0.20 -0.1 2,073,891 - EX28DRAFT_2053 0.20 -0.6 2,074,059 - EX28DRAFT_2053 0.29 -0.1 2,074,121 + EX28DRAFT_2053 0.32 +0.4 2,074,121 + EX28DRAFT_2053 0.32 +0.3 2,074,122 - EX28DRAFT_2053 0.32 -0.1 2,074,321 + EX28DRAFT_2053 0.42 -0.1 2,074,322 - EX28DRAFT_2053 0.42 +0.1
Or see this region's nucleotide sequence