Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1918 and EX28DRAFT_1919 are separated by 9 nucleotides EX28DRAFT_1919 and EX28DRAFT_1920 are separated by 21 nucleotides EX28DRAFT_1920 and EX28DRAFT_1921 overlap by 13 nucleotides
EX28DRAFT_1918: EX28DRAFT_1918 - Nitroreductase, at 1,928,461 to 1,929,051
_1918
EX28DRAFT_1919: EX28DRAFT_1919 - pyrimidine utilization flavin reductase protein F, at 1,929,061 to 1,929,555
_1919
EX28DRAFT_1920: EX28DRAFT_1920 - pyrimidine utilization transport protein G, at 1,929,577 to 1,930,899
_1920
EX28DRAFT_1921: EX28DRAFT_1921 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 1,930,887 to 1,931,810
_1921
Position (kb)
1929
1930
1931 Strain fitness (log2 ratio)
-1
0
1
2 at 1928.791 kb on - strand, within EX28DRAFT_1918 at 1928.852 kb on - strand, within EX28DRAFT_1918 at 1929.075 kb on + strand at 1929.212 kb on + strand, within EX28DRAFT_1919 at 1929.212 kb on + strand, within EX28DRAFT_1919 at 1929.302 kb on + strand, within EX28DRAFT_1919 at 1929.303 kb on - strand, within EX28DRAFT_1919 at 1929.553 kb on + strand at 1929.753 kb on + strand, within EX28DRAFT_1920 at 1929.818 kb on - strand, within EX28DRAFT_1920 at 1929.818 kb on - strand, within EX28DRAFT_1920 at 1929.938 kb on - strand, within EX28DRAFT_1920 at 1929.938 kb on - strand, within EX28DRAFT_1920 at 1930.199 kb on - strand, within EX28DRAFT_1920 at 1930.246 kb on - strand, within EX28DRAFT_1920 at 1930.361 kb on + strand, within EX28DRAFT_1920 at 1930.362 kb on - strand, within EX28DRAFT_1920 at 1930.411 kb on + strand, within EX28DRAFT_1920 at 1930.412 kb on - strand, within EX28DRAFT_1920 at 1930.412 kb on - strand, within EX28DRAFT_1920 at 1930.489 kb on + strand, within EX28DRAFT_1920 at 1930.490 kb on - strand, within EX28DRAFT_1920 at 1930.490 kb on - strand, within EX28DRAFT_1920 at 1930.529 kb on - strand, within EX28DRAFT_1920 at 1930.680 kb on + strand, within EX28DRAFT_1920 at 1930.680 kb on + strand, within EX28DRAFT_1920 at 1930.953 kb on + strand at 1930.954 kb on - strand at 1931.426 kb on + strand, within EX28DRAFT_1921 at 1931.426 kb on + strand, within EX28DRAFT_1921 at 1931.426 kb on + strand, within EX28DRAFT_1921 at 1931.469 kb on + strand, within EX28DRAFT_1921 at 1931.470 kb on - strand, within EX28DRAFT_1921 at 1931.487 kb on + strand, within EX28DRAFT_1921 at 1931.488 kb on - strand, within EX28DRAFT_1921 at 1931.491 kb on + strand, within EX28DRAFT_1921 at 1931.491 kb on + strand, within EX28DRAFT_1921 at 1931.491 kb on + strand, within EX28DRAFT_1921 at 1931.491 kb on + strand, within EX28DRAFT_1921 at 1931.491 kb on + strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.492 kb on - strand, within EX28DRAFT_1921 at 1931.504 kb on + strand, within EX28DRAFT_1921 at 1931.556 kb on - strand, within EX28DRAFT_1921 at 1931.780 kb on + strand at 1931.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,928,791 - EX28DRAFT_1918 0.56 +0.1 1,928,852 - EX28DRAFT_1918 0.66 +0.2 1,929,075 + -0.2 1,929,212 + EX28DRAFT_1919 0.31 -0.7 1,929,212 + EX28DRAFT_1919 0.31 -0.6 1,929,302 + EX28DRAFT_1919 0.49 -0.4 1,929,303 - EX28DRAFT_1919 0.49 +0.6 1,929,553 + -0.5 1,929,753 + EX28DRAFT_1920 0.13 -0.0 1,929,818 - EX28DRAFT_1920 0.18 +1.9 1,929,818 - EX28DRAFT_1920 0.18 -0.1 1,929,938 - EX28DRAFT_1920 0.27 +0.1 1,929,938 - EX28DRAFT_1920 0.27 -0.6 1,930,199 - EX28DRAFT_1920 0.47 -0.6 1,930,246 - EX28DRAFT_1920 0.51 -0.5 1,930,361 + EX28DRAFT_1920 0.59 +0.6 1,930,362 - EX28DRAFT_1920 0.59 +1.3 1,930,411 + EX28DRAFT_1920 0.63 -0.1 1,930,412 - EX28DRAFT_1920 0.63 +0.3 1,930,412 - EX28DRAFT_1920 0.63 +0.0 1,930,489 + EX28DRAFT_1920 0.69 -0.2 1,930,490 - EX28DRAFT_1920 0.69 +0.4 1,930,490 - EX28DRAFT_1920 0.69 +0.4 1,930,529 - EX28DRAFT_1920 0.72 +0.4 1,930,680 + EX28DRAFT_1920 0.83 -0.1 1,930,680 + EX28DRAFT_1920 0.83 -1.5 1,930,953 + -0.6 1,930,954 - -0.1 1,931,426 + EX28DRAFT_1921 0.58 -0.4 1,931,426 + EX28DRAFT_1921 0.58 +0.3 1,931,426 + EX28DRAFT_1921 0.58 -0.0 1,931,469 + EX28DRAFT_1921 0.63 -0.6 1,931,470 - EX28DRAFT_1921 0.63 -0.1 1,931,487 + EX28DRAFT_1921 0.65 +0.3 1,931,488 - EX28DRAFT_1921 0.65 -0.2 1,931,491 + EX28DRAFT_1921 0.65 +0.1 1,931,491 + EX28DRAFT_1921 0.65 +0.2 1,931,491 + EX28DRAFT_1921 0.65 -0.0 1,931,491 + EX28DRAFT_1921 0.65 +0.1 1,931,491 + EX28DRAFT_1921 0.65 -0.2 1,931,492 - EX28DRAFT_1921 0.65 +0.3 1,931,492 - EX28DRAFT_1921 0.65 -0.3 1,931,492 - EX28DRAFT_1921 0.65 +0.5 1,931,492 - EX28DRAFT_1921 0.65 -0.5 1,931,492 - EX28DRAFT_1921 0.65 +0.4 1,931,492 - EX28DRAFT_1921 0.65 -0.1 1,931,492 - EX28DRAFT_1921 0.65 -0.3 1,931,492 - EX28DRAFT_1921 0.65 +0.5 1,931,492 - EX28DRAFT_1921 0.65 +0.4 1,931,504 + EX28DRAFT_1921 0.67 +0.1 1,931,556 - EX28DRAFT_1921 0.72 -0.2 1,931,780 + +0.3 1,931,880 + +0.3
Or see this region's nucleotide sequence