Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1920

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1918 and EX28DRAFT_1919 are separated by 9 nucleotidesEX28DRAFT_1919 and EX28DRAFT_1920 are separated by 21 nucleotidesEX28DRAFT_1920 and EX28DRAFT_1921 overlap by 13 nucleotides EX28DRAFT_1918: EX28DRAFT_1918 - Nitroreductase, at 1,928,461 to 1,929,051 _1918 EX28DRAFT_1919: EX28DRAFT_1919 - pyrimidine utilization flavin reductase protein F, at 1,929,061 to 1,929,555 _1919 EX28DRAFT_1920: EX28DRAFT_1920 - pyrimidine utilization transport protein G, at 1,929,577 to 1,930,899 _1920 EX28DRAFT_1921: EX28DRAFT_1921 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 1,930,887 to 1,931,810 _1921 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -1 0 1 2at 1928.791 kb on - strand, within EX28DRAFT_1918at 1928.852 kb on - strand, within EX28DRAFT_1918at 1929.075 kb on + strandat 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.302 kb on + strand, within EX28DRAFT_1919at 1929.303 kb on - strand, within EX28DRAFT_1919at 1929.553 kb on + strandat 1929.753 kb on + strand, within EX28DRAFT_1920at 1929.818 kb on - strand, within EX28DRAFT_1920at 1929.818 kb on - strand, within EX28DRAFT_1920at 1929.938 kb on - strand, within EX28DRAFT_1920at 1929.938 kb on - strand, within EX28DRAFT_1920at 1930.199 kb on - strand, within EX28DRAFT_1920at 1930.246 kb on - strand, within EX28DRAFT_1920at 1930.361 kb on + strand, within EX28DRAFT_1920at 1930.362 kb on - strand, within EX28DRAFT_1920at 1930.411 kb on + strand, within EX28DRAFT_1920at 1930.412 kb on - strand, within EX28DRAFT_1920at 1930.412 kb on - strand, within EX28DRAFT_1920at 1930.489 kb on + strand, within EX28DRAFT_1920at 1930.490 kb on - strand, within EX28DRAFT_1920at 1930.490 kb on - strand, within EX28DRAFT_1920at 1930.529 kb on - strand, within EX28DRAFT_1920at 1930.680 kb on + strand, within EX28DRAFT_1920at 1930.680 kb on + strand, within EX28DRAFT_1920at 1930.953 kb on + strandat 1930.954 kb on - strandat 1931.426 kb on + strand, within EX28DRAFT_1921at 1931.426 kb on + strand, within EX28DRAFT_1921at 1931.426 kb on + strand, within EX28DRAFT_1921at 1931.469 kb on + strand, within EX28DRAFT_1921at 1931.470 kb on - strand, within EX28DRAFT_1921at 1931.487 kb on + strand, within EX28DRAFT_1921at 1931.488 kb on - strand, within EX28DRAFT_1921at 1931.491 kb on + strand, within EX28DRAFT_1921at 1931.491 kb on + strand, within EX28DRAFT_1921at 1931.491 kb on + strand, within EX28DRAFT_1921at 1931.491 kb on + strand, within EX28DRAFT_1921at 1931.491 kb on + strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.492 kb on - strand, within EX28DRAFT_1921at 1931.504 kb on + strand, within EX28DRAFT_1921at 1931.556 kb on - strand, within EX28DRAFT_1921at 1931.780 kb on + strandat 1931.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,928,791 - EX28DRAFT_1918 0.56 +0.1
1,928,852 - EX28DRAFT_1918 0.66 +0.2
1,929,075 + -0.2
1,929,212 + EX28DRAFT_1919 0.31 -0.7
1,929,212 + EX28DRAFT_1919 0.31 -0.6
1,929,302 + EX28DRAFT_1919 0.49 -0.4
1,929,303 - EX28DRAFT_1919 0.49 +0.6
1,929,553 + -0.5
1,929,753 + EX28DRAFT_1920 0.13 -0.0
1,929,818 - EX28DRAFT_1920 0.18 +1.9
1,929,818 - EX28DRAFT_1920 0.18 -0.1
1,929,938 - EX28DRAFT_1920 0.27 +0.1
1,929,938 - EX28DRAFT_1920 0.27 -0.6
1,930,199 - EX28DRAFT_1920 0.47 -0.6
1,930,246 - EX28DRAFT_1920 0.51 -0.5
1,930,361 + EX28DRAFT_1920 0.59 +0.6
1,930,362 - EX28DRAFT_1920 0.59 +1.3
1,930,411 + EX28DRAFT_1920 0.63 -0.1
1,930,412 - EX28DRAFT_1920 0.63 +0.3
1,930,412 - EX28DRAFT_1920 0.63 +0.0
1,930,489 + EX28DRAFT_1920 0.69 -0.2
1,930,490 - EX28DRAFT_1920 0.69 +0.4
1,930,490 - EX28DRAFT_1920 0.69 +0.4
1,930,529 - EX28DRAFT_1920 0.72 +0.4
1,930,680 + EX28DRAFT_1920 0.83 -0.1
1,930,680 + EX28DRAFT_1920 0.83 -1.5
1,930,953 + -0.6
1,930,954 - -0.1
1,931,426 + EX28DRAFT_1921 0.58 -0.4
1,931,426 + EX28DRAFT_1921 0.58 +0.3
1,931,426 + EX28DRAFT_1921 0.58 -0.0
1,931,469 + EX28DRAFT_1921 0.63 -0.6
1,931,470 - EX28DRAFT_1921 0.63 -0.1
1,931,487 + EX28DRAFT_1921 0.65 +0.3
1,931,488 - EX28DRAFT_1921 0.65 -0.2
1,931,491 + EX28DRAFT_1921 0.65 +0.1
1,931,491 + EX28DRAFT_1921 0.65 +0.2
1,931,491 + EX28DRAFT_1921 0.65 -0.0
1,931,491 + EX28DRAFT_1921 0.65 +0.1
1,931,491 + EX28DRAFT_1921 0.65 -0.2
1,931,492 - EX28DRAFT_1921 0.65 +0.3
1,931,492 - EX28DRAFT_1921 0.65 -0.3
1,931,492 - EX28DRAFT_1921 0.65 +0.5
1,931,492 - EX28DRAFT_1921 0.65 -0.5
1,931,492 - EX28DRAFT_1921 0.65 +0.4
1,931,492 - EX28DRAFT_1921 0.65 -0.1
1,931,492 - EX28DRAFT_1921 0.65 -0.3
1,931,492 - EX28DRAFT_1921 0.65 +0.5
1,931,492 - EX28DRAFT_1921 0.65 +0.4
1,931,504 + EX28DRAFT_1921 0.67 +0.1
1,931,556 - EX28DRAFT_1921 0.72 -0.2
1,931,780 + +0.3
1,931,880 + +0.3

Or see this region's nucleotide sequence