Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1737

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1736 and EX28DRAFT_1737 are separated by 129 nucleotidesEX28DRAFT_1737 and EX28DRAFT_1738 are separated by 11 nucleotides EX28DRAFT_1736: EX28DRAFT_1736 - Catalase, at 1,750,260 to 1,752,509 _1736 EX28DRAFT_1737: EX28DRAFT_1737 - Uncharacterized protein conserved in bacteria, at 1,752,639 to 1,753,388 _1737 EX28DRAFT_1738: EX28DRAFT_1738 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 1,753,400 to 1,754,755 _1738 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -1 0 1at 1751.648 kb on + strand, within EX28DRAFT_1736at 1751.648 kb on + strand, within EX28DRAFT_1736at 1751.757 kb on + strand, within EX28DRAFT_1736at 1751.760 kb on + strand, within EX28DRAFT_1736at 1751.859 kb on + strand, within EX28DRAFT_1736at 1752.104 kb on + strand, within EX28DRAFT_1736at 1752.262 kb on + strand, within EX28DRAFT_1736at 1752.262 kb on + strand, within EX28DRAFT_1736at 1752.263 kb on - strand, within EX28DRAFT_1736at 1752.263 kb on - strand, within EX28DRAFT_1736at 1752.295 kb on - strandat 1752.295 kb on - strandat 1752.295 kb on - strandat 1752.297 kb on + strandat 1752.298 kb on - strandat 1752.312 kb on + strandat 1752.576 kb on - strandat 1752.689 kb on - strandat 1752.869 kb on - strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.002 kb on - strand, within EX28DRAFT_1737at 1753.322 kb on + strandat 1753.323 kb on - strandat 1753.401 kb on + strandat 1753.402 kb on - strandat 1753.402 kb on - strandat 1753.746 kb on + strand, within EX28DRAFT_1738at 1753.746 kb on + strand, within EX28DRAFT_1738at 1753.747 kb on - strand, within EX28DRAFT_1738at 1753.747 kb on - strand, within EX28DRAFT_1738at 1753.771 kb on - strand, within EX28DRAFT_1738at 1753.867 kb on - strand, within EX28DRAFT_1738at 1753.924 kb on + strand, within EX28DRAFT_1738at 1753.925 kb on - strand, within EX28DRAFT_1738at 1753.926 kb on + strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.927 kb on - strand, within EX28DRAFT_1738at 1753.972 kb on - strand, within EX28DRAFT_1738at 1753.974 kb on + strand, within EX28DRAFT_1738at 1753.983 kb on + strand, within EX28DRAFT_1738at 1753.984 kb on - strand, within EX28DRAFT_1738at 1754.141 kb on + strand, within EX28DRAFT_1738at 1754.141 kb on + strand, within EX28DRAFT_1738at 1754.142 kb on - strand, within EX28DRAFT_1738at 1754.239 kb on + strand, within EX28DRAFT_1738at 1754.239 kb on + strand, within EX28DRAFT_1738at 1754.240 kb on - strand, within EX28DRAFT_1738

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,751,648 + EX28DRAFT_1736 0.62 +0.0
1,751,648 + EX28DRAFT_1736 0.62 -0.1
1,751,757 + EX28DRAFT_1736 0.67 -0.5
1,751,760 + EX28DRAFT_1736 0.67 -0.2
1,751,859 + EX28DRAFT_1736 0.71 -0.2
1,752,104 + EX28DRAFT_1736 0.82 -0.4
1,752,262 + EX28DRAFT_1736 0.89 -0.5
1,752,262 + EX28DRAFT_1736 0.89 +0.5
1,752,263 - EX28DRAFT_1736 0.89 +0.0
1,752,263 - EX28DRAFT_1736 0.89 +0.4
1,752,295 - +0.2
1,752,295 - -0.2
1,752,295 - -0.7
1,752,297 + -0.2
1,752,298 - -0.2
1,752,312 + -0.2
1,752,576 - +0.8
1,752,689 - +0.2
1,752,869 - EX28DRAFT_1737 0.31 -0.4
1,753,001 + EX28DRAFT_1737 0.48 -0.0
1,753,001 + EX28DRAFT_1737 0.48 +1.2
1,753,001 + EX28DRAFT_1737 0.48 -0.4
1,753,001 + EX28DRAFT_1737 0.48 -0.5
1,753,002 - EX28DRAFT_1737 0.48 +0.7
1,753,322 + -1.1
1,753,323 - -0.2
1,753,401 + -0.1
1,753,402 - -0.3
1,753,402 - +0.6
1,753,746 + EX28DRAFT_1738 0.26 -0.1
1,753,746 + EX28DRAFT_1738 0.26 -0.1
1,753,747 - EX28DRAFT_1738 0.26 +0.2
1,753,747 - EX28DRAFT_1738 0.26 +0.5
1,753,771 - EX28DRAFT_1738 0.27 -0.9
1,753,867 - EX28DRAFT_1738 0.34 +0.7
1,753,924 + EX28DRAFT_1738 0.39 +0.3
1,753,925 - EX28DRAFT_1738 0.39 -0.2
1,753,926 + EX28DRAFT_1738 0.39 -0.6
1,753,927 - EX28DRAFT_1738 0.39 +0.7
1,753,927 - EX28DRAFT_1738 0.39 +0.2
1,753,927 - EX28DRAFT_1738 0.39 +1.2
1,753,927 - EX28DRAFT_1738 0.39 -0.2
1,753,927 - EX28DRAFT_1738 0.39 -1.5
1,753,927 - EX28DRAFT_1738 0.39 +0.3
1,753,927 - EX28DRAFT_1738 0.39 +0.0
1,753,927 - EX28DRAFT_1738 0.39 +0.0
1,753,927 - EX28DRAFT_1738 0.39 +0.2
1,753,972 - EX28DRAFT_1738 0.42 +0.0
1,753,974 + EX28DRAFT_1738 0.42 +0.4
1,753,983 + EX28DRAFT_1738 0.43 +0.3
1,753,984 - EX28DRAFT_1738 0.43 -0.3
1,754,141 + EX28DRAFT_1738 0.55 -0.4
1,754,141 + EX28DRAFT_1738 0.55 +0.4
1,754,142 - EX28DRAFT_1738 0.55 -1.5
1,754,239 + EX28DRAFT_1738 0.62 -0.1
1,754,239 + EX28DRAFT_1738 0.62 +0.1
1,754,240 - EX28DRAFT_1738 0.62 -0.6

Or see this region's nucleotide sequence