Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1729

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1728 and EX28DRAFT_1729 are separated by 106 nucleotidesEX28DRAFT_1729 and EX28DRAFT_1730 are separated by 105 nucleotides EX28DRAFT_1728: EX28DRAFT_1728 - hexose kinase, 1-phosphofructokinase family, at 1,743,870 to 1,744,802 _1728 EX28DRAFT_1729: EX28DRAFT_1729 - Protein of unknown function (DUF2622), at 1,744,909 to 1,745,199 _1729 EX28DRAFT_1730: EX28DRAFT_1730 - Fructosamine-3-kinase, at 1,745,305 to 1,746,165 _1730 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -2 -1 0 1at 1744.252 kb on + strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728at 1744.870 kb on + strandat 1744.876 kb on - strandat 1744.934 kb on - strandat 1745.020 kb on - strand, within EX28DRAFT_1729at 1745.043 kb on + strand, within EX28DRAFT_1729at 1745.054 kb on + strand, within EX28DRAFT_1729at 1745.054 kb on + strand, within EX28DRAFT_1729at 1745.055 kb on - strand, within EX28DRAFT_1729at 1745.055 kb on - strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.167 kb on - strand, within EX28DRAFT_1729at 1745.197 kb on + strandat 1745.198 kb on - strandat 1745.198 kb on - strandat 1745.274 kb on - strandat 1745.330 kb on + strandat 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.465 kb on + strand, within EX28DRAFT_1730at 1745.466 kb on - strand, within EX28DRAFT_1730at 1745.558 kb on - strand, within EX28DRAFT_1730at 1745.578 kb on + strand, within EX28DRAFT_1730at 1745.607 kb on + strand, within EX28DRAFT_1730at 1745.809 kb on - strand, within EX28DRAFT_1730at 1745.896 kb on - strand, within EX28DRAFT_1730at 1745.923 kb on + strand, within EX28DRAFT_1730at 1745.924 kb on - strand, within EX28DRAFT_1730at 1746.008 kb on + strand, within EX28DRAFT_1730at 1746.070 kb on + strand, within EX28DRAFT_1730at 1746.070 kb on + strand, within EX28DRAFT_1730at 1746.071 kb on - strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.079 kb on + strand, within EX28DRAFT_1730at 1746.080 kb on - strandat 1746.081 kb on + strandat 1746.081 kb on + strandat 1746.082 kb on - strandat 1746.082 kb on - strandat 1746.082 kb on - strandat 1746.082 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,744,252 + EX28DRAFT_1728 0.41 +1.0
1,744,442 - EX28DRAFT_1728 0.61 +0.0
1,744,442 - EX28DRAFT_1728 0.61 +0.5
1,744,532 - EX28DRAFT_1728 0.71 +0.0
1,744,532 - EX28DRAFT_1728 0.71 +0.0
1,744,870 + -0.3
1,744,876 - +0.0
1,744,934 - -0.3
1,745,020 - EX28DRAFT_1729 0.38 +1.0
1,745,043 + EX28DRAFT_1729 0.46 +0.0
1,745,054 + EX28DRAFT_1729 0.50 -0.0
1,745,054 + EX28DRAFT_1729 0.50 +0.5
1,745,055 - EX28DRAFT_1729 0.50 -0.1
1,745,055 - EX28DRAFT_1729 0.50 -0.2
1,745,166 + EX28DRAFT_1729 0.88 +0.3
1,745,166 + EX28DRAFT_1729 0.88 -0.2
1,745,166 + EX28DRAFT_1729 0.88 +0.1
1,745,167 - EX28DRAFT_1729 0.89 +0.1
1,745,197 + +0.0
1,745,198 - +0.5
1,745,198 - +0.8
1,745,274 - +0.5
1,745,330 + +0.0
1,745,408 + EX28DRAFT_1730 0.12 -0.1
1,745,408 + EX28DRAFT_1730 0.12 +0.3
1,745,408 + EX28DRAFT_1730 0.12 -0.2
1,745,408 + EX28DRAFT_1730 0.12 -0.2
1,745,408 + EX28DRAFT_1730 0.12 +0.2
1,745,465 + EX28DRAFT_1730 0.19 +0.8
1,745,466 - EX28DRAFT_1730 0.19 +0.0
1,745,558 - EX28DRAFT_1730 0.29 -2.0
1,745,578 + EX28DRAFT_1730 0.32 +0.0
1,745,607 + EX28DRAFT_1730 0.35 +0.9
1,745,809 - EX28DRAFT_1730 0.59 -0.4
1,745,896 - EX28DRAFT_1730 0.69 +0.3
1,745,923 + EX28DRAFT_1730 0.72 -0.8
1,745,924 - EX28DRAFT_1730 0.72 +0.1
1,746,008 + EX28DRAFT_1730 0.82 +0.1
1,746,070 + EX28DRAFT_1730 0.89 +0.3
1,746,070 + EX28DRAFT_1730 0.89 -0.5
1,746,071 - EX28DRAFT_1730 0.89 +0.4
1,746,077 + EX28DRAFT_1730 0.90 -0.8
1,746,077 + EX28DRAFT_1730 0.90 +0.1
1,746,077 + EX28DRAFT_1730 0.90 -0.9
1,746,078 - EX28DRAFT_1730 0.90 -0.1
1,746,078 - EX28DRAFT_1730 0.90 -0.3
1,746,078 - EX28DRAFT_1730 0.90 +0.3
1,746,078 - EX28DRAFT_1730 0.90 -0.2
1,746,078 - EX28DRAFT_1730 0.90 -0.0
1,746,079 + EX28DRAFT_1730 0.90 -0.1
1,746,080 - -1.1
1,746,081 + -0.0
1,746,081 + +0.1
1,746,082 - +0.6
1,746,082 - -0.3
1,746,082 - -0.2
1,746,082 - -0.4

Or see this region's nucleotide sequence