Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1582 and EX28DRAFT_1583 overlap by 4 nucleotides EX28DRAFT_1583 and EX28DRAFT_1584 overlap by 4 nucleotides EX28DRAFT_1584 and EX28DRAFT_1585 overlap by 35 nucleotides EX28DRAFT_1585 and EX28DRAFT_1586 are separated by 39 nucleotides EX28DRAFT_1586 and EX28DRAFT_1587 are separated by 107 nucleotides
EX28DRAFT_1582: EX28DRAFT_1582 - Antitermination protein, at 1,595,756 to 1,596,589
_1582
EX28DRAFT_1583: EX28DRAFT_1583 - Holliday junction resolvase, at 1,596,586 to 1,596,954
_1583
EX28DRAFT_1584: EX28DRAFT_1584 - hypothetical protein, at 1,596,951 to 1,597,190
_1584
EX28DRAFT_1585: EX28DRAFT_1585 - Protein of unknown function (DUF1367), at 1,597,156 to 1,597,758
_1585
EX28DRAFT_1586: EX28DRAFT_1586 - hypothetical protein, at 1,597,798 to 1,598,040
_1586
EX28DRAFT_1587: EX28DRAFT_1587 - DinI-like family, at 1,598,148 to 1,598,372
_1587
Position (kb)
1596
1597
1598 Strain fitness (log2 ratio)
-2
-1
0
1 at 1595.984 kb on - strand, within EX28DRAFT_1582 at 1596.038 kb on + strand, within EX28DRAFT_1582 at 1596.038 kb on + strand, within EX28DRAFT_1582 at 1596.039 kb on - strand, within EX28DRAFT_1582 at 1596.041 kb on + strand, within EX28DRAFT_1582 at 1596.042 kb on - strand, within EX28DRAFT_1582 at 1596.042 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.098 kb on - strand, within EX28DRAFT_1582 at 1596.109 kb on - strand, within EX28DRAFT_1582 at 1596.317 kb on - strand, within EX28DRAFT_1582 at 1596.373 kb on - strand, within EX28DRAFT_1582 at 1596.444 kb on + strand, within EX28DRAFT_1582 at 1596.445 kb on - strand, within EX28DRAFT_1582 at 1596.504 kb on - strand, within EX28DRAFT_1582 at 1596.668 kb on - strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.790 kb on + strand, within EX28DRAFT_1583 at 1596.867 kb on + strand, within EX28DRAFT_1583 at 1596.998 kb on + strand, within EX28DRAFT_1584 at 1596.999 kb on - strand, within EX28DRAFT_1584 at 1597.085 kb on - strand, within EX28DRAFT_1584 at 1597.262 kb on + strand, within EX28DRAFT_1585 at 1597.262 kb on + strand, within EX28DRAFT_1585 at 1597.263 kb on - strand, within EX28DRAFT_1585 at 1597.388 kb on + strand, within EX28DRAFT_1585 at 1597.413 kb on + strand, within EX28DRAFT_1585 at 1597.450 kb on + strand, within EX28DRAFT_1585 at 1597.455 kb on - strand, within EX28DRAFT_1585 at 1597.455 kb on - strand, within EX28DRAFT_1585 at 1597.497 kb on - strand, within EX28DRAFT_1585 at 1597.552 kb on - strand, within EX28DRAFT_1585 at 1597.717 kb on + strand at 1597.737 kb on + strand at 1597.737 kb on + strand at 1597.744 kb on + strand at 1597.783 kb on - strand at 1597.783 kb on - strand at 1597.784 kb on + strand at 1597.785 kb on - strand at 1597.810 kb on - strand at 1597.813 kb on - strand at 1597.813 kb on - strand at 1597.813 kb on - strand at 1597.827 kb on + strand, within EX28DRAFT_1586 at 1597.915 kb on + strand, within EX28DRAFT_1586 at 1597.915 kb on + strand, within EX28DRAFT_1586 at 1597.964 kb on + strand, within EX28DRAFT_1586 at 1597.964 kb on + strand, within EX28DRAFT_1586 at 1597.964 kb on + strand, within EX28DRAFT_1586 at 1597.965 kb on - strand, within EX28DRAFT_1586 at 1597.965 kb on - strand, within EX28DRAFT_1586 at 1598.019 kb on + strand at 1598.042 kb on - strand at 1598.042 kb on - strand at 1598.042 kb on - strand at 1598.061 kb on + strand at 1598.062 kb on - strand at 1598.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,595,984 - EX28DRAFT_1582 0.27 +0.2 1,596,038 + EX28DRAFT_1582 0.34 -0.5 1,596,038 + EX28DRAFT_1582 0.34 +0.3 1,596,039 - EX28DRAFT_1582 0.34 -0.1 1,596,041 + EX28DRAFT_1582 0.34 -0.6 1,596,042 - EX28DRAFT_1582 0.34 +0.6 1,596,042 - EX28DRAFT_1582 0.34 -0.1 1,596,098 - EX28DRAFT_1582 0.41 -0.0 1,596,098 - EX28DRAFT_1582 0.41 -0.7 1,596,098 - EX28DRAFT_1582 0.41 -0.5 1,596,109 - EX28DRAFT_1582 0.42 +0.9 1,596,317 - EX28DRAFT_1582 0.67 -0.9 1,596,373 - EX28DRAFT_1582 0.74 +0.3 1,596,444 + EX28DRAFT_1582 0.82 -0.3 1,596,445 - EX28DRAFT_1582 0.83 +1.3 1,596,504 - EX28DRAFT_1582 0.90 -0.4 1,596,668 - EX28DRAFT_1583 0.22 -0.7 1,596,790 + EX28DRAFT_1583 0.55 -0.2 1,596,790 + EX28DRAFT_1583 0.55 -0.1 1,596,790 + EX28DRAFT_1583 0.55 +0.2 1,596,867 + EX28DRAFT_1583 0.76 +0.1 1,596,998 + EX28DRAFT_1584 0.20 -0.7 1,596,999 - EX28DRAFT_1584 0.20 -0.6 1,597,085 - EX28DRAFT_1584 0.56 -0.3 1,597,262 + EX28DRAFT_1585 0.18 -1.3 1,597,262 + EX28DRAFT_1585 0.18 -0.1 1,597,263 - EX28DRAFT_1585 0.18 +0.0 1,597,388 + EX28DRAFT_1585 0.38 -0.2 1,597,413 + EX28DRAFT_1585 0.43 +0.8 1,597,450 + EX28DRAFT_1585 0.49 -0.1 1,597,455 - EX28DRAFT_1585 0.50 -0.4 1,597,455 - EX28DRAFT_1585 0.50 -0.2 1,597,497 - EX28DRAFT_1585 0.57 -0.3 1,597,552 - EX28DRAFT_1585 0.66 -1.8 1,597,717 + -0.5 1,597,737 + +0.5 1,597,737 + -0.5 1,597,744 + -0.2 1,597,783 - -0.4 1,597,783 - +0.1 1,597,784 + -0.7 1,597,785 - +1.0 1,597,810 - +0.7 1,597,813 - +0.3 1,597,813 - -0.9 1,597,813 - +0.4 1,597,827 + EX28DRAFT_1586 0.12 -0.3 1,597,915 + EX28DRAFT_1586 0.48 -0.2 1,597,915 + EX28DRAFT_1586 0.48 -1.7 1,597,964 + EX28DRAFT_1586 0.68 +0.1 1,597,964 + EX28DRAFT_1586 0.68 +0.6 1,597,964 + EX28DRAFT_1586 0.68 -0.0 1,597,965 - EX28DRAFT_1586 0.69 +0.0 1,597,965 - EX28DRAFT_1586 0.69 -0.9 1,598,019 + +0.3 1,598,042 - +0.6 1,598,042 - +0.1 1,598,042 - +0.3 1,598,061 + +0.3 1,598,062 - -0.1 1,598,153 + -0.2
Or see this region's nucleotide sequence