Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1552

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1550 and EX28DRAFT_1551 are separated by 450 nucleotidesEX28DRAFT_1551 and EX28DRAFT_1552 are separated by 88 nucleotidesEX28DRAFT_1552 and EX28DRAFT_1553 are separated by 916 nucleotides EX28DRAFT_1550: EX28DRAFT_1550 - hypothetical protein, at 1,565,797 to 1,566,057 _1550 EX28DRAFT_1551: EX28DRAFT_1551 - hypothetical protein, at 1,566,508 to 1,566,963 _1551 EX28DRAFT_1552: EX28DRAFT_1552 - Uncharacterized conserved protein, at 1,567,052 to 1,567,729 _1552 EX28DRAFT_1553: EX28DRAFT_1553 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,568,646 to 1,569,914 _1553 Position (kb) 1567 1568Strain fitness (log2 ratio) -1 0 1 2at 1566.055 kb on + strandat 1566.056 kb on - strandat 1566.097 kb on + strandat 1566.097 kb on + strandat 1566.097 kb on + strandat 1566.098 kb on - strandat 1566.098 kb on - strandat 1566.099 kb on + strandat 1566.398 kb on + strandat 1566.398 kb on + strandat 1566.399 kb on - strandat 1566.399 kb on - strandat 1566.418 kb on + strandat 1566.418 kb on + strandat 1566.425 kb on + strandat 1566.472 kb on + strandat 1566.472 kb on + strandat 1566.518 kb on + strandat 1566.519 kb on - strandat 1566.561 kb on + strand, within EX28DRAFT_1551at 1566.769 kb on + strand, within EX28DRAFT_1551at 1566.769 kb on + strand, within EX28DRAFT_1551at 1566.770 kb on - strand, within EX28DRAFT_1551at 1566.783 kb on + strand, within EX28DRAFT_1551at 1566.784 kb on - strand, within EX28DRAFT_1551at 1566.873 kb on - strand, within EX28DRAFT_1551at 1566.897 kb on + strand, within EX28DRAFT_1551at 1566.970 kb on + strandat 1566.974 kb on + strandat 1566.974 kb on + strandat 1567.002 kb on - strandat 1567.002 kb on - strandat 1567.010 kb on + strandat 1567.010 kb on + strandat 1567.011 kb on - strandat 1567.011 kb on - strandat 1567.023 kb on - strandat 1567.100 kb on + strandat 1567.101 kb on - strandat 1567.134 kb on - strand, within EX28DRAFT_1552at 1567.312 kb on + strand, within EX28DRAFT_1552at 1567.313 kb on - strand, within EX28DRAFT_1552at 1567.428 kb on + strand, within EX28DRAFT_1552at 1567.433 kb on - strand, within EX28DRAFT_1552at 1567.495 kb on + strand, within EX28DRAFT_1552at 1567.496 kb on - strand, within EX28DRAFT_1552at 1567.588 kb on + strand, within EX28DRAFT_1552at 1568.155 kb on - strandat 1568.383 kb on - strandat 1568.440 kb on + strandat 1568.440 kb on + strandat 1568.441 kb on - strandat 1568.445 kb on - strandat 1568.445 kb on - strandat 1568.445 kb on - strandat 1568.483 kb on + strandat 1568.487 kb on + strandat 1568.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,566,055 + -1.3
1,566,056 - -0.1
1,566,097 + +0.4
1,566,097 + -0.2
1,566,097 + -0.1
1,566,098 - +0.1
1,566,098 - +0.1
1,566,099 + -0.7
1,566,398 + +0.6
1,566,398 + -1.1
1,566,399 - +1.8
1,566,399 - +1.2
1,566,418 + +0.2
1,566,418 + -0.4
1,566,425 + +0.8
1,566,472 + +0.1
1,566,472 + -0.1
1,566,518 + -1.0
1,566,519 - -1.4
1,566,561 + EX28DRAFT_1551 0.12 +0.6
1,566,769 + EX28DRAFT_1551 0.57 -0.3
1,566,769 + EX28DRAFT_1551 0.57 +0.3
1,566,770 - EX28DRAFT_1551 0.57 -0.0
1,566,783 + EX28DRAFT_1551 0.60 +0.6
1,566,784 - EX28DRAFT_1551 0.61 +0.3
1,566,873 - EX28DRAFT_1551 0.80 -0.4
1,566,897 + EX28DRAFT_1551 0.85 +0.1
1,566,970 + -0.9
1,566,974 + -0.5
1,566,974 + +0.3
1,567,002 - -0.7
1,567,002 - -1.0
1,567,010 + +0.0
1,567,010 + -0.4
1,567,011 - -0.3
1,567,011 - +0.1
1,567,023 - +0.1
1,567,100 + +0.2
1,567,101 - -0.3
1,567,134 - EX28DRAFT_1552 0.12 -0.1
1,567,312 + EX28DRAFT_1552 0.38 -0.1
1,567,313 - EX28DRAFT_1552 0.38 -1.4
1,567,428 + EX28DRAFT_1552 0.55 -0.0
1,567,433 - EX28DRAFT_1552 0.56 -0.1
1,567,495 + EX28DRAFT_1552 0.65 -0.8
1,567,496 - EX28DRAFT_1552 0.65 -0.4
1,567,588 + EX28DRAFT_1552 0.79 -1.3
1,568,155 - -0.8
1,568,383 - -0.1
1,568,440 + +0.3
1,568,440 + -0.4
1,568,441 - -0.5
1,568,445 - -1.2
1,568,445 - -0.4
1,568,445 - -0.5
1,568,483 + -0.3
1,568,487 + +0.1
1,568,647 + +0.2

Or see this region's nucleotide sequence