Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1550 and EX28DRAFT_1551 are separated by 450 nucleotides EX28DRAFT_1551 and EX28DRAFT_1552 are separated by 88 nucleotides EX28DRAFT_1552 and EX28DRAFT_1553 are separated by 916 nucleotides
EX28DRAFT_1550: EX28DRAFT_1550 - hypothetical protein, at 1,565,797 to 1,566,057
_1550
EX28DRAFT_1551: EX28DRAFT_1551 - hypothetical protein, at 1,566,508 to 1,566,963
_1551
EX28DRAFT_1552: EX28DRAFT_1552 - Uncharacterized conserved protein, at 1,567,052 to 1,567,729
_1552
EX28DRAFT_1553: EX28DRAFT_1553 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,568,646 to 1,569,914
_1553
Position (kb)
1567
1568 Strain fitness (log2 ratio)
-1
0
1
2 at 1566.055 kb on + strand at 1566.056 kb on - strand at 1566.097 kb on + strand at 1566.097 kb on + strand at 1566.097 kb on + strand at 1566.098 kb on - strand at 1566.098 kb on - strand at 1566.099 kb on + strand at 1566.398 kb on + strand at 1566.398 kb on + strand at 1566.399 kb on - strand at 1566.399 kb on - strand at 1566.418 kb on + strand at 1566.418 kb on + strand at 1566.425 kb on + strand at 1566.472 kb on + strand at 1566.472 kb on + strand at 1566.518 kb on + strand at 1566.519 kb on - strand at 1566.561 kb on + strand, within EX28DRAFT_1551 at 1566.769 kb on + strand, within EX28DRAFT_1551 at 1566.769 kb on + strand, within EX28DRAFT_1551 at 1566.770 kb on - strand, within EX28DRAFT_1551 at 1566.783 kb on + strand, within EX28DRAFT_1551 at 1566.784 kb on - strand, within EX28DRAFT_1551 at 1566.873 kb on - strand, within EX28DRAFT_1551 at 1566.897 kb on + strand, within EX28DRAFT_1551 at 1566.970 kb on + strand at 1566.974 kb on + strand at 1566.974 kb on + strand at 1567.002 kb on - strand at 1567.002 kb on - strand at 1567.010 kb on + strand at 1567.010 kb on + strand at 1567.011 kb on - strand at 1567.011 kb on - strand at 1567.023 kb on - strand at 1567.100 kb on + strand at 1567.101 kb on - strand at 1567.134 kb on - strand, within EX28DRAFT_1552 at 1567.312 kb on + strand, within EX28DRAFT_1552 at 1567.313 kb on - strand, within EX28DRAFT_1552 at 1567.428 kb on + strand, within EX28DRAFT_1552 at 1567.433 kb on - strand, within EX28DRAFT_1552 at 1567.495 kb on + strand, within EX28DRAFT_1552 at 1567.496 kb on - strand, within EX28DRAFT_1552 at 1567.588 kb on + strand, within EX28DRAFT_1552 at 1568.155 kb on - strand at 1568.383 kb on - strand at 1568.440 kb on + strand at 1568.440 kb on + strand at 1568.441 kb on - strand at 1568.445 kb on - strand at 1568.445 kb on - strand at 1568.445 kb on - strand at 1568.483 kb on + strand at 1568.487 kb on + strand at 1568.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,566,055 + -1.3 1,566,056 - -0.1 1,566,097 + +0.4 1,566,097 + -0.2 1,566,097 + -0.1 1,566,098 - +0.1 1,566,098 - +0.1 1,566,099 + -0.7 1,566,398 + +0.6 1,566,398 + -1.1 1,566,399 - +1.8 1,566,399 - +1.2 1,566,418 + +0.2 1,566,418 + -0.4 1,566,425 + +0.8 1,566,472 + +0.1 1,566,472 + -0.1 1,566,518 + -1.0 1,566,519 - -1.4 1,566,561 + EX28DRAFT_1551 0.12 +0.6 1,566,769 + EX28DRAFT_1551 0.57 -0.3 1,566,769 + EX28DRAFT_1551 0.57 +0.3 1,566,770 - EX28DRAFT_1551 0.57 -0.0 1,566,783 + EX28DRAFT_1551 0.60 +0.6 1,566,784 - EX28DRAFT_1551 0.61 +0.3 1,566,873 - EX28DRAFT_1551 0.80 -0.4 1,566,897 + EX28DRAFT_1551 0.85 +0.1 1,566,970 + -0.9 1,566,974 + -0.5 1,566,974 + +0.3 1,567,002 - -0.7 1,567,002 - -1.0 1,567,010 + +0.0 1,567,010 + -0.4 1,567,011 - -0.3 1,567,011 - +0.1 1,567,023 - +0.1 1,567,100 + +0.2 1,567,101 - -0.3 1,567,134 - EX28DRAFT_1552 0.12 -0.1 1,567,312 + EX28DRAFT_1552 0.38 -0.1 1,567,313 - EX28DRAFT_1552 0.38 -1.4 1,567,428 + EX28DRAFT_1552 0.55 -0.0 1,567,433 - EX28DRAFT_1552 0.56 -0.1 1,567,495 + EX28DRAFT_1552 0.65 -0.8 1,567,496 - EX28DRAFT_1552 0.65 -0.4 1,567,588 + EX28DRAFT_1552 0.79 -1.3 1,568,155 - -0.8 1,568,383 - -0.1 1,568,440 + +0.3 1,568,440 + -0.4 1,568,441 - -0.5 1,568,445 - -1.2 1,568,445 - -0.4 1,568,445 - -0.5 1,568,483 + -0.3 1,568,487 + +0.1 1,568,647 + +0.2
Or see this region's nucleotide sequence