Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1424

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1423 and EX28DRAFT_1424 are separated by 72 nucleotidesEX28DRAFT_1424 and EX28DRAFT_1425 are separated by 9 nucleotides EX28DRAFT_1423: EX28DRAFT_1423 - Alkyl sulfatase and related hydrolases, at 1,433,239 to 1,435,212 _1423 EX28DRAFT_1424: EX28DRAFT_1424 - diguanylate cyclase (GGDEF) domain, at 1,435,285 to 1,436,391 _1424 EX28DRAFT_1425: EX28DRAFT_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,436,401 to 1,437,387 _1425 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1434.349 kb on + strand, within EX28DRAFT_1423at 1434.356 kb on - strand, within EX28DRAFT_1423at 1434.470 kb on - strand, within EX28DRAFT_1423at 1434.491 kb on + strand, within EX28DRAFT_1423at 1434.491 kb on + strand, within EX28DRAFT_1423at 1434.492 kb on - strand, within EX28DRAFT_1423at 1434.502 kb on + strand, within EX28DRAFT_1423at 1434.502 kb on + strand, within EX28DRAFT_1423at 1434.502 kb on + strand, within EX28DRAFT_1423at 1434.502 kb on + strand, within EX28DRAFT_1423at 1434.502 kb on + strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.503 kb on - strand, within EX28DRAFT_1423at 1434.511 kb on + strand, within EX28DRAFT_1423at 1434.589 kb on + strand, within EX28DRAFT_1423at 1434.589 kb on + strand, within EX28DRAFT_1423at 1434.589 kb on + strand, within EX28DRAFT_1423at 1434.590 kb on - strand, within EX28DRAFT_1423at 1434.591 kb on + strand, within EX28DRAFT_1423at 1434.592 kb on - strand, within EX28DRAFT_1423at 1434.781 kb on + strand, within EX28DRAFT_1423at 1434.889 kb on + strand, within EX28DRAFT_1423at 1434.889 kb on + strand, within EX28DRAFT_1423at 1434.943 kb on - strand, within EX28DRAFT_1423at 1434.943 kb on - strand, within EX28DRAFT_1423at 1434.973 kb on + strand, within EX28DRAFT_1423at 1435.164 kb on + strandat 1435.164 kb on + strandat 1435.165 kb on - strandat 1435.165 kb on - strandat 1435.168 kb on + strandat 1435.169 kb on - strandat 1435.274 kb on + strandat 1435.275 kb on - strandat 1435.341 kb on + strandat 1435.341 kb on + strandat 1435.341 kb on + strandat 1435.341 kb on + strandat 1435.342 kb on - strandat 1435.342 kb on - strandat 1435.342 kb on - strandat 1435.342 kb on - strandat 1435.342 kb on - strandat 1435.428 kb on - strand, within EX28DRAFT_1424at 1435.435 kb on - strand, within EX28DRAFT_1424at 1435.614 kb on + strand, within EX28DRAFT_1424at 1435.676 kb on + strand, within EX28DRAFT_1424at 1435.791 kb on + strand, within EX28DRAFT_1424at 1435.807 kb on - strand, within EX28DRAFT_1424at 1435.841 kb on + strand, within EX28DRAFT_1424at 1435.870 kb on - strand, within EX28DRAFT_1424at 1436.007 kb on + strand, within EX28DRAFT_1424at 1436.036 kb on - strand, within EX28DRAFT_1424at 1436.381 kb on + strandat 1436.677 kb on - strand, within EX28DRAFT_1425at 1436.847 kb on + strand, within EX28DRAFT_1425at 1436.848 kb on - strand, within EX28DRAFT_1425at 1436.961 kb on + strand, within EX28DRAFT_1425at 1436.962 kb on - strand, within EX28DRAFT_1425at 1436.966 kb on + strand, within EX28DRAFT_1425at 1437.068 kb on + strand, within EX28DRAFT_1425at 1437.068 kb on + strand, within EX28DRAFT_1425at 1437.069 kb on - strand, within EX28DRAFT_1425at 1437.272 kb on - strand, within EX28DRAFT_1425at 1437.272 kb on - strand, within EX28DRAFT_1425

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,434,349 + EX28DRAFT_1423 0.56 -0.3
1,434,356 - EX28DRAFT_1423 0.57 +0.1
1,434,470 - EX28DRAFT_1423 0.62 +0.5
1,434,491 + EX28DRAFT_1423 0.63 +0.1
1,434,491 + EX28DRAFT_1423 0.63 -0.3
1,434,492 - EX28DRAFT_1423 0.63 -1.0
1,434,502 + EX28DRAFT_1423 0.64 -0.0
1,434,502 + EX28DRAFT_1423 0.64 -0.1
1,434,502 + EX28DRAFT_1423 0.64 +1.6
1,434,502 + EX28DRAFT_1423 0.64 +0.6
1,434,502 + EX28DRAFT_1423 0.64 +0.2
1,434,503 - EX28DRAFT_1423 0.64 -1.6
1,434,503 - EX28DRAFT_1423 0.64 +0.5
1,434,503 - EX28DRAFT_1423 0.64 +0.9
1,434,503 - EX28DRAFT_1423 0.64 -0.1
1,434,503 - EX28DRAFT_1423 0.64 -0.9
1,434,503 - EX28DRAFT_1423 0.64 -0.7
1,434,511 + EX28DRAFT_1423 0.64 +0.0
1,434,589 + EX28DRAFT_1423 0.68 -0.3
1,434,589 + EX28DRAFT_1423 0.68 -0.1
1,434,589 + EX28DRAFT_1423 0.68 +0.5
1,434,590 - EX28DRAFT_1423 0.68 -1.7
1,434,591 + EX28DRAFT_1423 0.68 -0.2
1,434,592 - EX28DRAFT_1423 0.69 -0.7
1,434,781 + EX28DRAFT_1423 0.78 +0.9
1,434,889 + EX28DRAFT_1423 0.84 -0.1
1,434,889 + EX28DRAFT_1423 0.84 -0.1
1,434,943 - EX28DRAFT_1423 0.86 +0.3
1,434,943 - EX28DRAFT_1423 0.86 -0.5
1,434,973 + EX28DRAFT_1423 0.88 +0.0
1,435,164 + +0.4
1,435,164 + -0.6
1,435,165 - +0.1
1,435,165 - +0.4
1,435,168 + -0.3
1,435,169 - -0.0
1,435,274 + +0.3
1,435,275 - -0.2
1,435,341 + -0.1
1,435,341 + -0.2
1,435,341 + +0.9
1,435,341 + -0.6
1,435,342 - -1.5
1,435,342 - -0.1
1,435,342 - +0.8
1,435,342 - +0.1
1,435,342 - +0.3
1,435,428 - EX28DRAFT_1424 0.13 -0.6
1,435,435 - EX28DRAFT_1424 0.14 -0.6
1,435,614 + EX28DRAFT_1424 0.30 +0.2
1,435,676 + EX28DRAFT_1424 0.35 -0.6
1,435,791 + EX28DRAFT_1424 0.46 -0.3
1,435,807 - EX28DRAFT_1424 0.47 +0.1
1,435,841 + EX28DRAFT_1424 0.50 +0.0
1,435,870 - EX28DRAFT_1424 0.53 -0.2
1,436,007 + EX28DRAFT_1424 0.65 -0.0
1,436,036 - EX28DRAFT_1424 0.68 -0.1
1,436,381 + -0.8
1,436,677 - EX28DRAFT_1425 0.28 -0.6
1,436,847 + EX28DRAFT_1425 0.45 +0.0
1,436,848 - EX28DRAFT_1425 0.45 -0.2
1,436,961 + EX28DRAFT_1425 0.57 -0.6
1,436,962 - EX28DRAFT_1425 0.57 +1.9
1,436,966 + EX28DRAFT_1425 0.57 +0.5
1,437,068 + EX28DRAFT_1425 0.68 +0.7
1,437,068 + EX28DRAFT_1425 0.68 -0.1
1,437,069 - EX28DRAFT_1425 0.68 -1.2
1,437,272 - EX28DRAFT_1425 0.88 +0.1
1,437,272 - EX28DRAFT_1425 0.88 -0.1

Or see this region's nucleotide sequence