Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1423 and EX28DRAFT_1424 are separated by 72 nucleotides EX28DRAFT_1424 and EX28DRAFT_1425 are separated by 9 nucleotides
EX28DRAFT_1423: EX28DRAFT_1423 - Alkyl sulfatase and related hydrolases, at 1,433,239 to 1,435,212
_1423
EX28DRAFT_1424: EX28DRAFT_1424 - diguanylate cyclase (GGDEF) domain, at 1,435,285 to 1,436,391
_1424
EX28DRAFT_1425: EX28DRAFT_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,436,401 to 1,437,387
_1425
Position (kb)
1435
1436
1437 Strain fitness (log2 ratio)
-1
0
1
2 at 1434.349 kb on + strand, within EX28DRAFT_1423 at 1434.356 kb on - strand, within EX28DRAFT_1423 at 1434.470 kb on - strand, within EX28DRAFT_1423 at 1434.491 kb on + strand, within EX28DRAFT_1423 at 1434.491 kb on + strand, within EX28DRAFT_1423 at 1434.492 kb on - strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.502 kb on + strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.503 kb on - strand, within EX28DRAFT_1423 at 1434.511 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.589 kb on + strand, within EX28DRAFT_1423 at 1434.590 kb on - strand, within EX28DRAFT_1423 at 1434.591 kb on + strand, within EX28DRAFT_1423 at 1434.592 kb on - strand, within EX28DRAFT_1423 at 1434.781 kb on + strand, within EX28DRAFT_1423 at 1434.889 kb on + strand, within EX28DRAFT_1423 at 1434.889 kb on + strand, within EX28DRAFT_1423 at 1434.943 kb on - strand, within EX28DRAFT_1423 at 1434.943 kb on - strand, within EX28DRAFT_1423 at 1434.973 kb on + strand, within EX28DRAFT_1423 at 1435.164 kb on + strand at 1435.164 kb on + strand at 1435.165 kb on - strand at 1435.165 kb on - strand at 1435.168 kb on + strand at 1435.169 kb on - strand at 1435.274 kb on + strand at 1435.275 kb on - strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.341 kb on + strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.342 kb on - strand at 1435.428 kb on - strand, within EX28DRAFT_1424 at 1435.435 kb on - strand, within EX28DRAFT_1424 at 1435.614 kb on + strand, within EX28DRAFT_1424 at 1435.676 kb on + strand, within EX28DRAFT_1424 at 1435.791 kb on + strand, within EX28DRAFT_1424 at 1435.807 kb on - strand, within EX28DRAFT_1424 at 1435.841 kb on + strand, within EX28DRAFT_1424 at 1435.870 kb on - strand, within EX28DRAFT_1424 at 1436.007 kb on + strand, within EX28DRAFT_1424 at 1436.036 kb on - strand, within EX28DRAFT_1424 at 1436.381 kb on + strand at 1436.677 kb on - strand, within EX28DRAFT_1425 at 1436.847 kb on + strand, within EX28DRAFT_1425 at 1436.848 kb on - strand, within EX28DRAFT_1425 at 1436.961 kb on + strand, within EX28DRAFT_1425 at 1436.962 kb on - strand, within EX28DRAFT_1425 at 1436.966 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.069 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,434,349 + EX28DRAFT_1423 0.56 -0.3 1,434,356 - EX28DRAFT_1423 0.57 +0.1 1,434,470 - EX28DRAFT_1423 0.62 +0.5 1,434,491 + EX28DRAFT_1423 0.63 +0.1 1,434,491 + EX28DRAFT_1423 0.63 -0.3 1,434,492 - EX28DRAFT_1423 0.63 -1.0 1,434,502 + EX28DRAFT_1423 0.64 -0.0 1,434,502 + EX28DRAFT_1423 0.64 -0.1 1,434,502 + EX28DRAFT_1423 0.64 +1.6 1,434,502 + EX28DRAFT_1423 0.64 +0.6 1,434,502 + EX28DRAFT_1423 0.64 +0.2 1,434,503 - EX28DRAFT_1423 0.64 -1.6 1,434,503 - EX28DRAFT_1423 0.64 +0.5 1,434,503 - EX28DRAFT_1423 0.64 +0.9 1,434,503 - EX28DRAFT_1423 0.64 -0.1 1,434,503 - EX28DRAFT_1423 0.64 -0.9 1,434,503 - EX28DRAFT_1423 0.64 -0.7 1,434,511 + EX28DRAFT_1423 0.64 +0.0 1,434,589 + EX28DRAFT_1423 0.68 -0.3 1,434,589 + EX28DRAFT_1423 0.68 -0.1 1,434,589 + EX28DRAFT_1423 0.68 +0.5 1,434,590 - EX28DRAFT_1423 0.68 -1.7 1,434,591 + EX28DRAFT_1423 0.68 -0.2 1,434,592 - EX28DRAFT_1423 0.69 -0.7 1,434,781 + EX28DRAFT_1423 0.78 +0.9 1,434,889 + EX28DRAFT_1423 0.84 -0.1 1,434,889 + EX28DRAFT_1423 0.84 -0.1 1,434,943 - EX28DRAFT_1423 0.86 +0.3 1,434,943 - EX28DRAFT_1423 0.86 -0.5 1,434,973 + EX28DRAFT_1423 0.88 +0.0 1,435,164 + +0.4 1,435,164 + -0.6 1,435,165 - +0.1 1,435,165 - +0.4 1,435,168 + -0.3 1,435,169 - -0.0 1,435,274 + +0.3 1,435,275 - -0.2 1,435,341 + -0.1 1,435,341 + -0.2 1,435,341 + +0.9 1,435,341 + -0.6 1,435,342 - -1.5 1,435,342 - -0.1 1,435,342 - +0.8 1,435,342 - +0.1 1,435,342 - +0.3 1,435,428 - EX28DRAFT_1424 0.13 -0.6 1,435,435 - EX28DRAFT_1424 0.14 -0.6 1,435,614 + EX28DRAFT_1424 0.30 +0.2 1,435,676 + EX28DRAFT_1424 0.35 -0.6 1,435,791 + EX28DRAFT_1424 0.46 -0.3 1,435,807 - EX28DRAFT_1424 0.47 +0.1 1,435,841 + EX28DRAFT_1424 0.50 +0.0 1,435,870 - EX28DRAFT_1424 0.53 -0.2 1,436,007 + EX28DRAFT_1424 0.65 -0.0 1,436,036 - EX28DRAFT_1424 0.68 -0.1 1,436,381 + -0.8 1,436,677 - EX28DRAFT_1425 0.28 -0.6 1,436,847 + EX28DRAFT_1425 0.45 +0.0 1,436,848 - EX28DRAFT_1425 0.45 -0.2 1,436,961 + EX28DRAFT_1425 0.57 -0.6 1,436,962 - EX28DRAFT_1425 0.57 +1.9 1,436,966 + EX28DRAFT_1425 0.57 +0.5 1,437,068 + EX28DRAFT_1425 0.68 +0.7 1,437,068 + EX28DRAFT_1425 0.68 -0.1 1,437,069 - EX28DRAFT_1425 0.68 -1.2 1,437,272 - EX28DRAFT_1425 0.88 +0.1 1,437,272 - EX28DRAFT_1425 0.88 -0.1
Or see this region's nucleotide sequence