Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1184 and EX28DRAFT_1185 overlap by 4 nucleotides EX28DRAFT_1185 and EX28DRAFT_1186 are separated by 44 nucleotides EX28DRAFT_1186 and EX28DRAFT_1187 are separated by 145 nucleotides EX28DRAFT_1187 and EX28DRAFT_1188 are separated by 12 nucleotides
EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774
_1184
EX28DRAFT_1185: EX28DRAFT_1185 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,205,771 to 1,206,511
_1185
EX28DRAFT_1186: EX28DRAFT_1186 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,206,556 to 1,207,551
_1186
EX28DRAFT_1187: EX28DRAFT_1187 - Acetyltransferase (GNAT) family, at 1,207,697 to 1,208,137
_1187
EX28DRAFT_1188: EX28DRAFT_1188 - Sortase and related acyltransferases, at 1,208,150 to 1,208,620
_1188
Position (kb)
1206
1207
1208 Strain fitness (log2 ratio)
-2
-1
0
1 at 1205.806 kb on + strand at 1205.814 kb on + strand at 1205.839 kb on + strand at 1205.841 kb on + strand at 1206.050 kb on + strand, within EX28DRAFT_1185 at 1206.204 kb on + strand, within EX28DRAFT_1185 at 1206.204 kb on + strand, within EX28DRAFT_1185 at 1206.204 kb on + strand, within EX28DRAFT_1185 at 1206.205 kb on - strand, within EX28DRAFT_1185 at 1206.205 kb on - strand, within EX28DRAFT_1185 at 1206.205 kb on - strand, within EX28DRAFT_1185 at 1206.205 kb on - strand, within EX28DRAFT_1185 at 1206.288 kb on + strand, within EX28DRAFT_1185 at 1206.288 kb on + strand, within EX28DRAFT_1185 at 1206.289 kb on - strand, within EX28DRAFT_1185 at 1206.289 kb on - strand, within EX28DRAFT_1185 at 1206.303 kb on - strand, within EX28DRAFT_1185 at 1206.320 kb on - strand, within EX28DRAFT_1185 at 1206.367 kb on + strand, within EX28DRAFT_1185 at 1206.436 kb on + strand, within EX28DRAFT_1185 at 1206.436 kb on + strand, within EX28DRAFT_1185 at 1206.493 kb on + strand at 1206.502 kb on + strand at 1206.502 kb on + strand at 1206.502 kb on + strand at 1206.547 kb on + strand at 1206.547 kb on + strand at 1206.548 kb on - strand at 1206.653 kb on + strand at 1206.773 kb on + strand, within EX28DRAFT_1186 at 1206.782 kb on + strand, within EX28DRAFT_1186 at 1206.989 kb on + strand, within EX28DRAFT_1186 at 1206.998 kb on + strand, within EX28DRAFT_1186 at 1207.168 kb on - strand, within EX28DRAFT_1186 at 1207.168 kb on - strand, within EX28DRAFT_1186 at 1207.168 kb on - strand, within EX28DRAFT_1186 at 1207.170 kb on + strand, within EX28DRAFT_1186 at 1207.171 kb on - strand, within EX28DRAFT_1186 at 1207.192 kb on + strand, within EX28DRAFT_1186 at 1207.332 kb on - strand, within EX28DRAFT_1186 at 1207.332 kb on - strand, within EX28DRAFT_1186 at 1207.341 kb on + strand, within EX28DRAFT_1186 at 1207.347 kb on - strand, within EX28DRAFT_1186 at 1207.363 kb on + strand, within EX28DRAFT_1186 at 1207.533 kb on - strand at 1207.586 kb on + strand at 1207.586 kb on + strand at 1207.586 kb on + strand at 1207.587 kb on - strand at 1207.588 kb on + strand at 1207.588 kb on + strand at 1207.588 kb on + strand at 1207.588 kb on + strand at 1207.588 kb on + strand at 1207.588 kb on + strand at 1207.589 kb on - strand at 1207.589 kb on - strand at 1207.589 kb on - strand at 1207.589 kb on - strand at 1207.604 kb on + strand at 1207.605 kb on - strand at 1207.605 kb on - strand at 1207.646 kb on + strand at 1207.646 kb on + strand at 1207.647 kb on - strand at 1207.650 kb on + strand at 1207.650 kb on + strand at 1207.651 kb on - strand at 1207.665 kb on + strand at 1207.723 kb on - strand at 1207.740 kb on + strand at 1207.741 kb on - strand, within EX28DRAFT_1187 at 1207.749 kb on + strand, within EX28DRAFT_1187 at 1207.756 kb on + strand, within EX28DRAFT_1187 at 1207.791 kb on - strand, within EX28DRAFT_1187 at 1207.791 kb on - strand, within EX28DRAFT_1187 at 1207.838 kb on - strand, within EX28DRAFT_1187 at 1208.049 kb on + strand, within EX28DRAFT_1187 at 1208.049 kb on + strand, within EX28DRAFT_1187 at 1208.050 kb on - strand, within EX28DRAFT_1187 at 1208.069 kb on - strand, within EX28DRAFT_1187 at 1208.071 kb on - strand, within EX28DRAFT_1187 at 1208.101 kb on - strand at 1208.101 kb on - strand at 1208.115 kb on - strand at 1208.151 kb on + strand at 1208.151 kb on + strand at 1208.152 kb on - strand at 1208.180 kb on + strand at 1208.180 kb on + strand at 1208.211 kb on + strand, within EX28DRAFT_1188 at 1208.212 kb on - strand, within EX28DRAFT_1188 at 1208.375 kb on + strand, within EX28DRAFT_1188 at 1208.428 kb on + strand, within EX28DRAFT_1188 at 1208.429 kb on - strand, within EX28DRAFT_1188 at 1208.452 kb on - strand, within EX28DRAFT_1188 at 1208.460 kb on + strand, within EX28DRAFT_1188 at 1208.533 kb on - strand, within EX28DRAFT_1188 at 1208.533 kb on - strand, within EX28DRAFT_1188
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,205,806 + -0.1 1,205,814 + -0.3 1,205,839 + -0.2 1,205,841 + +0.3 1,206,050 + EX28DRAFT_1185 0.38 -0.5 1,206,204 + EX28DRAFT_1185 0.58 +0.2 1,206,204 + EX28DRAFT_1185 0.58 +0.1 1,206,204 + EX28DRAFT_1185 0.58 -1.3 1,206,205 - EX28DRAFT_1185 0.59 +0.4 1,206,205 - EX28DRAFT_1185 0.59 +0.2 1,206,205 - EX28DRAFT_1185 0.59 +0.1 1,206,205 - EX28DRAFT_1185 0.59 -0.3 1,206,288 + EX28DRAFT_1185 0.70 +0.2 1,206,288 + EX28DRAFT_1185 0.70 -0.1 1,206,289 - EX28DRAFT_1185 0.70 +0.1 1,206,289 - EX28DRAFT_1185 0.70 +0.4 1,206,303 - EX28DRAFT_1185 0.72 -0.1 1,206,320 - EX28DRAFT_1185 0.74 +0.4 1,206,367 + EX28DRAFT_1185 0.80 +0.9 1,206,436 + EX28DRAFT_1185 0.90 +0.4 1,206,436 + EX28DRAFT_1185 0.90 +0.2 1,206,493 + -0.4 1,206,502 + -0.5 1,206,502 + +0.6 1,206,502 + -0.2 1,206,547 + -0.2 1,206,547 + +0.2 1,206,548 - +0.6 1,206,653 + +0.2 1,206,773 + EX28DRAFT_1186 0.22 -1.8 1,206,782 + EX28DRAFT_1186 0.23 +0.4 1,206,989 + EX28DRAFT_1186 0.43 -0.5 1,206,998 + EX28DRAFT_1186 0.44 +1.2 1,207,168 - EX28DRAFT_1186 0.61 +0.8 1,207,168 - EX28DRAFT_1186 0.61 -0.5 1,207,168 - EX28DRAFT_1186 0.61 +1.0 1,207,170 + EX28DRAFT_1186 0.62 +0.2 1,207,171 - EX28DRAFT_1186 0.62 +0.4 1,207,192 + EX28DRAFT_1186 0.64 +0.0 1,207,332 - EX28DRAFT_1186 0.78 +0.2 1,207,332 - EX28DRAFT_1186 0.78 -0.2 1,207,341 + EX28DRAFT_1186 0.79 +0.7 1,207,347 - EX28DRAFT_1186 0.79 +0.4 1,207,363 + EX28DRAFT_1186 0.81 +0.5 1,207,533 - -0.6 1,207,586 + -1.0 1,207,586 + +0.6 1,207,586 + -0.2 1,207,587 - +1.0 1,207,588 + -0.6 1,207,588 + +0.2 1,207,588 + +0.7 1,207,588 + +0.5 1,207,588 + -0.5 1,207,588 + -0.1 1,207,589 - -0.4 1,207,589 - -0.2 1,207,589 - +1.0 1,207,589 - +0.4 1,207,604 + +0.2 1,207,605 - +0.1 1,207,605 - +0.0 1,207,646 + -0.3 1,207,646 + -1.2 1,207,647 - +1.4 1,207,650 + -0.2 1,207,650 + -0.8 1,207,651 - -0.3 1,207,665 + +0.1 1,207,723 - -0.1 1,207,740 + -2.0 1,207,741 - EX28DRAFT_1187 0.10 -0.2 1,207,749 + EX28DRAFT_1187 0.12 +0.2 1,207,756 + EX28DRAFT_1187 0.13 -0.4 1,207,791 - EX28DRAFT_1187 0.21 -0.5 1,207,791 - EX28DRAFT_1187 0.21 +0.5 1,207,838 - EX28DRAFT_1187 0.32 +0.5 1,208,049 + EX28DRAFT_1187 0.80 -0.5 1,208,049 + EX28DRAFT_1187 0.80 -0.0 1,208,050 - EX28DRAFT_1187 0.80 -0.4 1,208,069 - EX28DRAFT_1187 0.84 -0.2 1,208,071 - EX28DRAFT_1187 0.85 -0.3 1,208,101 - +0.6 1,208,101 - +0.1 1,208,115 - -0.5 1,208,151 + +0.5 1,208,151 + -0.5 1,208,152 - +0.2 1,208,180 + -0.5 1,208,180 + +0.9 1,208,211 + EX28DRAFT_1188 0.13 +0.2 1,208,212 - EX28DRAFT_1188 0.13 -2.6 1,208,375 + EX28DRAFT_1188 0.48 +0.4 1,208,428 + EX28DRAFT_1188 0.59 -0.0 1,208,429 - EX28DRAFT_1188 0.59 -0.1 1,208,452 - EX28DRAFT_1188 0.64 +0.6 1,208,460 + EX28DRAFT_1188 0.66 -0.0 1,208,533 - EX28DRAFT_1188 0.81 -2.1 1,208,533 - EX28DRAFT_1188 0.81 +0.6
Or see this region's nucleotide sequence