Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1182 and EX28DRAFT_1183 are separated by 4 nucleotides EX28DRAFT_1183 and EX28DRAFT_1184 are separated by 135 nucleotides
EX28DRAFT_1182: EX28DRAFT_1182 - Trans-aconitate methyltransferase, at 1,202,387 to 1,203,145
_1182
EX28DRAFT_1183: EX28DRAFT_1183 - Cytochrome c biogenesis protein, at 1,203,150 to 1,204,340
_1183
EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774
_1184
Position (kb)
1203
1204
1205 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1202.166 kb on - strand at 1202.186 kb on + strand at 1202.649 kb on - strand, within EX28DRAFT_1182 at 1202.679 kb on - strand, within EX28DRAFT_1182 at 1202.760 kb on + strand, within EX28DRAFT_1182 at 1202.760 kb on + strand, within EX28DRAFT_1182 at 1202.880 kb on - strand, within EX28DRAFT_1182 at 1202.882 kb on + strand, within EX28DRAFT_1182 at 1202.882 kb on + strand, within EX28DRAFT_1182 at 1202.918 kb on - strand, within EX28DRAFT_1182 at 1202.933 kb on + strand, within EX28DRAFT_1182 at 1202.933 kb on + strand, within EX28DRAFT_1182 at 1203.097 kb on - strand at 1203.227 kb on - strand at 1203.227 kb on - strand at 1203.227 kb on - strand at 1203.231 kb on + strand at 1203.231 kb on + strand at 1203.231 kb on + strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.232 kb on - strand at 1203.253 kb on + strand at 1203.253 kb on + strand at 1203.257 kb on - strand at 1203.257 kb on - strand at 1203.257 kb on - strand at 1203.302 kb on - strand, within EX28DRAFT_1183 at 1203.305 kb on + strand, within EX28DRAFT_1183 at 1203.305 kb on + strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.306 kb on - strand, within EX28DRAFT_1183 at 1203.431 kb on - strand, within EX28DRAFT_1183 at 1203.464 kb on + strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.465 kb on - strand, within EX28DRAFT_1183 at 1203.729 kb on + strand, within EX28DRAFT_1183 at 1203.729 kb on + strand, within EX28DRAFT_1183 at 1203.730 kb on - strand, within EX28DRAFT_1183 at 1203.730 kb on - strand, within EX28DRAFT_1183 at 1203.825 kb on + strand, within EX28DRAFT_1183 at 1203.915 kb on - strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.032 kb on + strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.033 kb on - strand, within EX28DRAFT_1183 at 1204.034 kb on + strand, within EX28DRAFT_1183 at 1204.035 kb on - strand, within EX28DRAFT_1183 at 1204.065 kb on - strand, within EX28DRAFT_1183 at 1204.286 kb on + strand at 1204.287 kb on - strand at 1204.306 kb on - strand at 1204.329 kb on + strand at 1204.340 kb on + strand at 1204.340 kb on + strand at 1204.354 kb on + strand at 1204.354 kb on + strand at 1204.355 kb on - strand at 1204.355 kb on - strand at 1204.383 kb on - strand at 1204.409 kb on + strand at 1204.410 kb on - strand at 1204.461 kb on + strand at 1204.462 kb on - strand at 1204.462 kb on - strand at 1204.462 kb on - strand at 1204.642 kb on - strand, within EX28DRAFT_1184 at 1204.642 kb on - strand, within EX28DRAFT_1184 at 1204.755 kb on - strand, within EX28DRAFT_1184 at 1204.755 kb on - strand, within EX28DRAFT_1184 at 1204.819 kb on - strand, within EX28DRAFT_1184 at 1204.949 kb on - strand, within EX28DRAFT_1184 at 1205.113 kb on + strand, within EX28DRAFT_1184 at 1205.114 kb on - strand, within EX28DRAFT_1184
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,202,166 - +0.3 1,202,186 + -0.1 1,202,649 - EX28DRAFT_1182 0.35 -0.3 1,202,679 - EX28DRAFT_1182 0.38 -0.0 1,202,760 + EX28DRAFT_1182 0.49 -0.1 1,202,760 + EX28DRAFT_1182 0.49 -2.0 1,202,880 - EX28DRAFT_1182 0.65 +0.8 1,202,882 + EX28DRAFT_1182 0.65 -0.5 1,202,882 + EX28DRAFT_1182 0.65 -0.0 1,202,918 - EX28DRAFT_1182 0.70 +0.4 1,202,933 + EX28DRAFT_1182 0.72 +0.3 1,202,933 + EX28DRAFT_1182 0.72 -2.7 1,203,097 - +0.3 1,203,227 - -0.2 1,203,227 - +0.3 1,203,227 - +0.8 1,203,231 + -0.4 1,203,231 + -0.5 1,203,231 + -0.2 1,203,232 - +0.4 1,203,232 - +0.3 1,203,232 - -0.1 1,203,232 - -2.0 1,203,253 + -0.4 1,203,253 + -0.3 1,203,257 - -0.7 1,203,257 - +0.4 1,203,257 - -0.1 1,203,302 - EX28DRAFT_1183 0.13 -0.1 1,203,305 + EX28DRAFT_1183 0.13 +0.6 1,203,305 + EX28DRAFT_1183 0.13 +0.1 1,203,306 - EX28DRAFT_1183 0.13 -0.5 1,203,306 - EX28DRAFT_1183 0.13 +0.1 1,203,306 - EX28DRAFT_1183 0.13 -1.0 1,203,306 - EX28DRAFT_1183 0.13 +0.1 1,203,431 - EX28DRAFT_1183 0.24 +0.3 1,203,464 + EX28DRAFT_1183 0.26 -0.1 1,203,465 - EX28DRAFT_1183 0.26 -1.7 1,203,465 - EX28DRAFT_1183 0.26 -0.4 1,203,465 - EX28DRAFT_1183 0.26 +0.6 1,203,729 + EX28DRAFT_1183 0.49 +0.4 1,203,729 + EX28DRAFT_1183 0.49 +1.4 1,203,730 - EX28DRAFT_1183 0.49 -0.1 1,203,730 - EX28DRAFT_1183 0.49 -0.1 1,203,825 + EX28DRAFT_1183 0.57 -0.3 1,203,915 - EX28DRAFT_1183 0.64 +0.1 1,204,032 + EX28DRAFT_1183 0.74 -0.9 1,204,032 + EX28DRAFT_1183 0.74 -0.2 1,204,032 + EX28DRAFT_1183 0.74 +0.2 1,204,033 - EX28DRAFT_1183 0.74 -0.7 1,204,033 - EX28DRAFT_1183 0.74 -0.9 1,204,033 - EX28DRAFT_1183 0.74 +0.0 1,204,034 + EX28DRAFT_1183 0.74 +0.2 1,204,035 - EX28DRAFT_1183 0.74 +0.2 1,204,065 - EX28DRAFT_1183 0.77 -0.2 1,204,286 + -3.3 1,204,287 - -0.2 1,204,306 - -0.3 1,204,329 + +0.1 1,204,340 + +1.2 1,204,340 + -0.4 1,204,354 + +0.3 1,204,354 + +0.2 1,204,355 - -0.0 1,204,355 - -0.4 1,204,383 - -0.2 1,204,409 + +0.3 1,204,410 - +1.7 1,204,461 + -0.3 1,204,462 - +0.1 1,204,462 - -0.2 1,204,462 - -0.4 1,204,642 - EX28DRAFT_1184 0.13 +0.0 1,204,642 - EX28DRAFT_1184 0.13 -0.1 1,204,755 - EX28DRAFT_1184 0.21 +0.2 1,204,755 - EX28DRAFT_1184 0.21 +1.0 1,204,819 - EX28DRAFT_1184 0.26 +0.1 1,204,949 - EX28DRAFT_1184 0.36 +0.7 1,205,113 + EX28DRAFT_1184 0.49 +0.2 1,205,114 - EX28DRAFT_1184 0.49 -0.2
Or see this region's nucleotide sequence