Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1066

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1064 and EX28DRAFT_1065 overlap by 8 nucleotidesEX28DRAFT_1065 and EX28DRAFT_1066 are separated by 160 nucleotidesEX28DRAFT_1066 and EX28DRAFT_1067 are separated by 35 nucleotidesEX28DRAFT_1067 and EX28DRAFT_1068 are separated by 108 nucleotides EX28DRAFT_1064: EX28DRAFT_1064 - Helix-turn-helix domain, at 1,075,862 to 1,076,503 _1064 EX28DRAFT_1065: EX28DRAFT_1065 - Predicted transcriptional regulators, at 1,076,496 to 1,076,795 _1065 EX28DRAFT_1066: EX28DRAFT_1066 - translation elongation factor EF-G, at 1,076,956 to 1,079,055 _1066 EX28DRAFT_1067: EX28DRAFT_1067 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,079,091 to 1,079,663 _1067 EX28DRAFT_1068: EX28DRAFT_1068 - Arylamine N-acetyltransferase, at 1,079,772 to 1,080,617 _1068 Position (kb) 1076 1077 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2at 1076.021 kb on + strand, within EX28DRAFT_1064at 1076.080 kb on - strand, within EX28DRAFT_1064at 1076.153 kb on + strand, within EX28DRAFT_1064at 1076.154 kb on - strand, within EX28DRAFT_1064at 1076.194 kb on + strand, within EX28DRAFT_1064at 1076.198 kb on + strand, within EX28DRAFT_1064at 1076.198 kb on + strand, within EX28DRAFT_1064at 1076.199 kb on - strand, within EX28DRAFT_1064at 1076.199 kb on - strand, within EX28DRAFT_1064at 1076.242 kb on + strand, within EX28DRAFT_1064at 1076.243 kb on - strand, within EX28DRAFT_1064at 1076.243 kb on - strand, within EX28DRAFT_1064at 1076.255 kb on + strand, within EX28DRAFT_1064at 1076.514 kb on + strandat 1076.514 kb on + strandat 1076.653 kb on - strand, within EX28DRAFT_1065at 1076.653 kb on - strand, within EX28DRAFT_1065at 1076.763 kb on + strand, within EX28DRAFT_1065at 1076.827 kb on - strandat 1076.857 kb on - strandat 1076.952 kb on + strandat 1077.053 kb on - strandat 1077.083 kb on + strandat 1077.084 kb on - strandat 1077.190 kb on + strand, within EX28DRAFT_1066at 1077.292 kb on + strand, within EX28DRAFT_1066at 1077.293 kb on - strand, within EX28DRAFT_1066at 1077.293 kb on - strand, within EX28DRAFT_1066at 1077.293 kb on - strand, within EX28DRAFT_1066at 1077.293 kb on - strand, within EX28DRAFT_1066at 1077.293 kb on - strand, within EX28DRAFT_1066at 1077.348 kb on + strand, within EX28DRAFT_1066at 1077.349 kb on - strand, within EX28DRAFT_1066at 1077.664 kb on + strand, within EX28DRAFT_1066at 1077.665 kb on - strand, within EX28DRAFT_1066at 1077.771 kb on + strand, within EX28DRAFT_1066at 1077.998 kb on - strand, within EX28DRAFT_1066at 1078.293 kb on + strand, within EX28DRAFT_1066at 1078.320 kb on + strand, within EX28DRAFT_1066at 1078.435 kb on - strand, within EX28DRAFT_1066at 1078.586 kb on - strand, within EX28DRAFT_1066at 1078.797 kb on - strand, within EX28DRAFT_1066at 1078.833 kb on + strand, within EX28DRAFT_1066at 1078.937 kb on - strandat 1078.978 kb on + strandat 1078.979 kb on - strandat 1078.979 kb on - strandat 1078.981 kb on - strandat 1078.981 kb on - strandat 1079.034 kb on + strandat 1079.053 kb on + strandat 1079.056 kb on + strandat 1079.157 kb on - strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.637 kb on + strandat 1079.638 kb on - strandat 1079.638 kb on - strandat 1079.663 kb on + strandat 1079.678 kb on + strandat 1079.690 kb on + strandat 1079.707 kb on + strandat 1079.736 kb on + strandat 1079.739 kb on - strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.892 kb on - strand, within EX28DRAFT_1068at 1079.974 kb on - strand, within EX28DRAFT_1068

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,076,021 + EX28DRAFT_1064 0.25 -0.1
1,076,080 - EX28DRAFT_1064 0.34 +0.6
1,076,153 + EX28DRAFT_1064 0.45 -0.6
1,076,154 - EX28DRAFT_1064 0.45 -0.2
1,076,194 + EX28DRAFT_1064 0.52 +1.1
1,076,198 + EX28DRAFT_1064 0.52 -0.7
1,076,198 + EX28DRAFT_1064 0.52 -0.2
1,076,199 - EX28DRAFT_1064 0.52 -0.2
1,076,199 - EX28DRAFT_1064 0.52 -1.9
1,076,242 + EX28DRAFT_1064 0.59 +0.4
1,076,243 - EX28DRAFT_1064 0.59 -1.1
1,076,243 - EX28DRAFT_1064 0.59 -0.0
1,076,255 + EX28DRAFT_1064 0.61 +0.2
1,076,514 + -1.0
1,076,514 + +0.7
1,076,653 - EX28DRAFT_1065 0.52 -0.1
1,076,653 - EX28DRAFT_1065 0.52 +1.1
1,076,763 + EX28DRAFT_1065 0.89 +0.3
1,076,827 - +1.0
1,076,857 - -0.4
1,076,952 + +1.6
1,077,053 - +0.5
1,077,083 + +0.8
1,077,084 - +0.6
1,077,190 + EX28DRAFT_1066 0.11 +0.0
1,077,292 + EX28DRAFT_1066 0.16 +0.1
1,077,293 - EX28DRAFT_1066 0.16 +0.0
1,077,293 - EX28DRAFT_1066 0.16 -0.8
1,077,293 - EX28DRAFT_1066 0.16 -0.5
1,077,293 - EX28DRAFT_1066 0.16 -0.2
1,077,293 - EX28DRAFT_1066 0.16 -0.6
1,077,348 + EX28DRAFT_1066 0.19 -0.4
1,077,349 - EX28DRAFT_1066 0.19 +0.4
1,077,664 + EX28DRAFT_1066 0.34 -0.2
1,077,665 - EX28DRAFT_1066 0.34 +0.2
1,077,771 + EX28DRAFT_1066 0.39 +0.3
1,077,998 - EX28DRAFT_1066 0.50 -0.2
1,078,293 + EX28DRAFT_1066 0.64 +0.0
1,078,320 + EX28DRAFT_1066 0.65 -0.1
1,078,435 - EX28DRAFT_1066 0.70 +0.0
1,078,586 - EX28DRAFT_1066 0.78 -0.2
1,078,797 - EX28DRAFT_1066 0.88 -0.2
1,078,833 + EX28DRAFT_1066 0.89 -0.4
1,078,937 - +0.2
1,078,978 + +0.0
1,078,979 - +0.1
1,078,979 - -0.1
1,078,981 - +2.0
1,078,981 - -0.2
1,079,034 + +0.4
1,079,053 + -0.6
1,079,056 + +0.4
1,079,157 - EX28DRAFT_1067 0.12 +0.4
1,079,407 + EX28DRAFT_1067 0.55 +0.0
1,079,407 + EX28DRAFT_1067 0.55 +0.1
1,079,637 + +0.8
1,079,638 - +0.4
1,079,638 - +0.4
1,079,663 + -0.5
1,079,678 + -0.2
1,079,690 + +0.3
1,079,707 + +0.8
1,079,736 + -0.3
1,079,739 - -0.1
1,079,771 + +0.2
1,079,771 + -1.9
1,079,771 + -0.2
1,079,771 + +0.2
1,079,771 + -0.5
1,079,771 + -0.1
1,079,771 + -0.3
1,079,771 + -0.6
1,079,772 - -0.6
1,079,772 - -0.3
1,079,772 - -0.3
1,079,772 - +0.2
1,079,860 + EX28DRAFT_1068 0.10 -0.4
1,079,860 + EX28DRAFT_1068 0.10 +0.0
1,079,860 + EX28DRAFT_1068 0.10 -0.6
1,079,861 - EX28DRAFT_1068 0.11 -0.2
1,079,861 - EX28DRAFT_1068 0.11 +0.5
1,079,891 + EX28DRAFT_1068 0.14 -0.0
1,079,891 + EX28DRAFT_1068 0.14 +0.4
1,079,892 - EX28DRAFT_1068 0.14 -0.1
1,079,974 - EX28DRAFT_1068 0.24 -0.9

Or see this region's nucleotide sequence