Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1052 and EX28DRAFT_1053 are separated by 14 nucleotides EX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotides EX28DRAFT_1054 and EX28DRAFT_1055 are separated by 9 nucleotides
EX28DRAFT_1052: EX28DRAFT_1052 - FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family, at 1,063,801 to 1,065,117
_1052
EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064
_1053
EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583
_1054
EX28DRAFT_1055: EX28DRAFT_1055 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,066,593 to 1,067,519
_1055
Position (kb)
1065
1066
1067 Strain fitness (log2 ratio)
-1
0
1 at 1064.263 kb on + strand, within EX28DRAFT_1052 at 1064.323 kb on - strand, within EX28DRAFT_1052 at 1064.572 kb on - strand, within EX28DRAFT_1052 at 1064.595 kb on - strand, within EX28DRAFT_1052 at 1064.686 kb on - strand, within EX28DRAFT_1052 at 1064.686 kb on - strand, within EX28DRAFT_1052 at 1064.702 kb on - strand, within EX28DRAFT_1052 at 1064.941 kb on + strand, within EX28DRAFT_1052 at 1064.942 kb on - strand, within EX28DRAFT_1052 at 1065.115 kb on + strand at 1065.149 kb on + strand at 1065.204 kb on - strand at 1065.249 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.802 kb on - strand, within EX28DRAFT_1053 at 1066.023 kb on - strand at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.150 kb on - strand, within EX28DRAFT_1054 at 1066.170 kb on + strand, within EX28DRAFT_1054 at 1066.171 kb on - strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.209 kb on + strand, within EX28DRAFT_1054 at 1066.276 kb on - strand, within EX28DRAFT_1054 at 1066.507 kb on - strand, within EX28DRAFT_1054 at 1066.572 kb on - strand at 1066.935 kb on + strand, within EX28DRAFT_1055
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,064,263 + EX28DRAFT_1052 0.35 -0.7 1,064,323 - EX28DRAFT_1052 0.40 -0.4 1,064,572 - EX28DRAFT_1052 0.59 -0.2 1,064,595 - EX28DRAFT_1052 0.60 -0.2 1,064,686 - EX28DRAFT_1052 0.67 +0.1 1,064,686 - EX28DRAFT_1052 0.67 -0.6 1,064,702 - EX28DRAFT_1052 0.68 -0.3 1,064,941 + EX28DRAFT_1052 0.87 +0.8 1,064,942 - EX28DRAFT_1052 0.87 -0.6 1,065,115 + +0.0 1,065,149 + +1.1 1,065,204 - -0.0 1,065,249 - EX28DRAFT_1053 0.13 +0.4 1,065,499 - EX28DRAFT_1053 0.39 +0.5 1,065,499 - EX28DRAFT_1053 0.39 +0.2 1,065,499 - EX28DRAFT_1053 0.39 +0.8 1,065,499 - EX28DRAFT_1053 0.39 +0.1 1,065,802 - EX28DRAFT_1053 0.72 +0.8 1,066,023 - +0.4 1,066,150 - EX28DRAFT_1054 0.15 -0.2 1,066,150 - EX28DRAFT_1054 0.15 -0.6 1,066,150 - EX28DRAFT_1054 0.15 -0.3 1,066,170 + EX28DRAFT_1054 0.19 +0.0 1,066,171 - EX28DRAFT_1054 0.19 -0.4 1,066,209 + EX28DRAFT_1054 0.26 +0.0 1,066,209 + EX28DRAFT_1054 0.26 +0.1 1,066,276 - EX28DRAFT_1054 0.40 -0.9 1,066,507 - EX28DRAFT_1054 0.85 +0.2 1,066,572 - +0.3 1,066,935 + EX28DRAFT_1055 0.37 -0.3
Or see this region's nucleotide sequence