Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0519

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0517 and EX28DRAFT_0518 are separated by 0 nucleotidesEX28DRAFT_0518 and EX28DRAFT_0519 are separated by 38 nucleotidesEX28DRAFT_0519 and EX28DRAFT_0520 are separated by 80 nucleotidesEX28DRAFT_0520 and EX28DRAFT_0521 overlap by 4 nucleotides EX28DRAFT_0517: EX28DRAFT_0517 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 510,569 to 511,603 _0517 EX28DRAFT_0518: EX28DRAFT_0518 - Bacterial transferase hexapeptide (six repeats), at 511,604 to 512,164 _0518 EX28DRAFT_0519: EX28DRAFT_0519 - Predicted nucleoside-diphosphate sugar epimerases, at 512,203 to 514,089 _0519 EX28DRAFT_0520: EX28DRAFT_0520 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 514,170 to 514,709 _0520 EX28DRAFT_0521: EX28DRAFT_0521 - Nucleoside-diphosphate-sugar epimerases, at 514,706 to 515,524 _0521 Position (kb) 512 513 514 515Strain fitness (log2 ratio) -2 -1 0 1at 511.334 kb on - strand, within EX28DRAFT_0517at 511.337 kb on - strand, within EX28DRAFT_0517at 511.771 kb on + strand, within EX28DRAFT_0518at 511.771 kb on + strand, within EX28DRAFT_0518at 511.772 kb on - strand, within EX28DRAFT_0518at 511.807 kb on + strand, within EX28DRAFT_0518at 511.945 kb on - strand, within EX28DRAFT_0518at 511.972 kb on + strand, within EX28DRAFT_0518at 511.977 kb on + strand, within EX28DRAFT_0518at 511.981 kb on + strand, within EX28DRAFT_0518at 511.982 kb on - strand, within EX28DRAFT_0518at 511.993 kb on + strand, within EX28DRAFT_0518at 512.035 kb on - strand, within EX28DRAFT_0518at 512.162 kb on + strandat 512.249 kb on + strandat 512.268 kb on - strandat 512.268 kb on - strandat 512.420 kb on + strand, within EX28DRAFT_0519at 512.425 kb on + strand, within EX28DRAFT_0519at 512.429 kb on + strand, within EX28DRAFT_0519at 512.450 kb on + strand, within EX28DRAFT_0519at 512.558 kb on + strand, within EX28DRAFT_0519at 512.558 kb on + strand, within EX28DRAFT_0519at 512.559 kb on - strand, within EX28DRAFT_0519at 512.631 kb on - strand, within EX28DRAFT_0519at 512.634 kb on + strand, within EX28DRAFT_0519at 512.636 kb on + strand, within EX28DRAFT_0519at 512.636 kb on + strand, within EX28DRAFT_0519at 512.638 kb on + strand, within EX28DRAFT_0519at 512.666 kb on + strand, within EX28DRAFT_0519at 512.695 kb on + strand, within EX28DRAFT_0519at 512.793 kb on - strand, within EX28DRAFT_0519at 512.800 kb on + strand, within EX28DRAFT_0519at 512.862 kb on + strand, within EX28DRAFT_0519at 512.862 kb on + strand, within EX28DRAFT_0519at 512.864 kb on + strand, within EX28DRAFT_0519at 512.864 kb on + strand, within EX28DRAFT_0519at 512.864 kb on + strand, within EX28DRAFT_0519at 512.865 kb on - strand, within EX28DRAFT_0519at 512.865 kb on - strand, within EX28DRAFT_0519at 512.868 kb on + strand, within EX28DRAFT_0519at 512.955 kb on + strand, within EX28DRAFT_0519at 512.963 kb on + strand, within EX28DRAFT_0519at 513.081 kb on - strand, within EX28DRAFT_0519at 513.201 kb on + strand, within EX28DRAFT_0519at 513.301 kb on - strand, within EX28DRAFT_0519at 513.301 kb on - strand, within EX28DRAFT_0519at 513.352 kb on - strand, within EX28DRAFT_0519at 513.365 kb on + strand, within EX28DRAFT_0519at 513.366 kb on - strand, within EX28DRAFT_0519at 513.366 kb on - strand, within EX28DRAFT_0519at 513.420 kb on + strand, within EX28DRAFT_0519at 513.510 kb on + strand, within EX28DRAFT_0519at 514.020 kb on - strandat 514.020 kb on - strandat 514.039 kb on - strandat 514.381 kb on + strand, within EX28DRAFT_0520at 514.721 kb on - strandat 514.850 kb on + strand, within EX28DRAFT_0521at 514.893 kb on + strand, within EX28DRAFT_0521

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
511,334 - EX28DRAFT_0517 0.74 -1.8
511,337 - EX28DRAFT_0517 0.74 -0.6
511,771 + EX28DRAFT_0518 0.30 +0.1
511,771 + EX28DRAFT_0518 0.30 +0.0
511,772 - EX28DRAFT_0518 0.30 -0.6
511,807 + EX28DRAFT_0518 0.36 +0.5
511,945 - EX28DRAFT_0518 0.61 -0.4
511,972 + EX28DRAFT_0518 0.66 +0.6
511,977 + EX28DRAFT_0518 0.66 +0.6
511,981 + EX28DRAFT_0518 0.67 +0.7
511,982 - EX28DRAFT_0518 0.67 -0.2
511,993 + EX28DRAFT_0518 0.69 -0.1
512,035 - EX28DRAFT_0518 0.77 -1.4
512,162 + +0.4
512,249 + -0.9
512,268 - -1.3
512,268 - -0.5
512,420 + EX28DRAFT_0519 0.11 -0.8
512,425 + EX28DRAFT_0519 0.12 +1.7
512,429 + EX28DRAFT_0519 0.12 -0.9
512,450 + EX28DRAFT_0519 0.13 +0.1
512,558 + EX28DRAFT_0519 0.19 -0.6
512,558 + EX28DRAFT_0519 0.19 -0.9
512,559 - EX28DRAFT_0519 0.19 -2.0
512,631 - EX28DRAFT_0519 0.23 -1.2
512,634 + EX28DRAFT_0519 0.23 -1.0
512,636 + EX28DRAFT_0519 0.23 -1.5
512,636 + EX28DRAFT_0519 0.23 -0.7
512,638 + EX28DRAFT_0519 0.23 -0.9
512,666 + EX28DRAFT_0519 0.25 +0.2
512,695 + EX28DRAFT_0519 0.26 -0.8
512,793 - EX28DRAFT_0519 0.31 -1.3
512,800 + EX28DRAFT_0519 0.32 +0.0
512,862 + EX28DRAFT_0519 0.35 -1.1
512,862 + EX28DRAFT_0519 0.35 +0.8
512,864 + EX28DRAFT_0519 0.35 +0.4
512,864 + EX28DRAFT_0519 0.35 -0.7
512,864 + EX28DRAFT_0519 0.35 -0.3
512,865 - EX28DRAFT_0519 0.35 -0.4
512,865 - EX28DRAFT_0519 0.35 -0.5
512,868 + EX28DRAFT_0519 0.35 -1.0
512,955 + EX28DRAFT_0519 0.40 +0.1
512,963 + EX28DRAFT_0519 0.40 -0.7
513,081 - EX28DRAFT_0519 0.47 -0.2
513,201 + EX28DRAFT_0519 0.53 -0.3
513,301 - EX28DRAFT_0519 0.58 -0.5
513,301 - EX28DRAFT_0519 0.58 -1.0
513,352 - EX28DRAFT_0519 0.61 -0.4
513,365 + EX28DRAFT_0519 0.62 +0.0
513,366 - EX28DRAFT_0519 0.62 -0.5
513,366 - EX28DRAFT_0519 0.62 -1.1
513,420 + EX28DRAFT_0519 0.64 -0.3
513,510 + EX28DRAFT_0519 0.69 -0.0
514,020 - -0.7
514,020 - -0.4
514,039 - -0.6
514,381 + EX28DRAFT_0520 0.39 -0.8
514,721 - -0.5
514,850 + EX28DRAFT_0521 0.18 -1.9
514,893 + EX28DRAFT_0521 0.23 -1.5

Or see this region's nucleotide sequence