Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03960

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01981 and CCNA_03960 overlap by 7 nucleotidesCCNA_03960 and CCNA_01982 overlap by 2 nucleotides CCNA_01981: CCNA_01981 - DNA translocation competence protein ComA, at 2,125,014 to 2,127,191 _01981 CCNA_03960: CCNA_03960 - hypothetical protein, at 2,127,185 to 2,127,355 _03960 CCNA_01982: CCNA_01982 - glutamyl-tRNA synthetase, at 2,127,354 to 2,128,766 _01982 Position (kb) 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2126.198 kb on - strand, within CCNA_01981at 2126.198 kb on - strand, within CCNA_01981at 2126.198 kb on - strand, within CCNA_01981at 2126.210 kb on - strand, within CCNA_01981at 2126.264 kb on + strand, within CCNA_01981at 2126.264 kb on + strand, within CCNA_01981at 2126.324 kb on - strand, within CCNA_01981at 2126.351 kb on - strand, within CCNA_01981at 2126.351 kb on - strand, within CCNA_01981at 2126.358 kb on - strand, within CCNA_01981at 2126.373 kb on - strand, within CCNA_01981at 2126.385 kb on + strand, within CCNA_01981at 2126.446 kb on - strand, within CCNA_01981at 2126.526 kb on - strand, within CCNA_01981at 2126.535 kb on - strand, within CCNA_01981at 2126.609 kb on - strand, within CCNA_01981at 2126.704 kb on - strand, within CCNA_01981at 2126.724 kb on - strand, within CCNA_01981at 2126.742 kb on + strand, within CCNA_01981at 2126.788 kb on - strand, within CCNA_01981at 2126.874 kb on - strand, within CCNA_01981at 2126.915 kb on - strand, within CCNA_01981at 2126.944 kb on + strand, within CCNA_01981at 2127.026 kb on + strandat 2127.027 kb on - strandat 2127.113 kb on + strandat 2127.238 kb on + strand, within CCNA_03960at 2127.238 kb on + strand, within CCNA_03960at 2127.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,126,198 - CCNA_01981 0.54 -0.2
2,126,198 - CCNA_01981 0.54 -0.2
2,126,198 - CCNA_01981 0.54 -2.0
2,126,210 - CCNA_01981 0.55 -1.8
2,126,264 + CCNA_01981 0.57 +0.9
2,126,264 + CCNA_01981 0.57 +0.4
2,126,324 - CCNA_01981 0.60 +0.1
2,126,351 - CCNA_01981 0.61 -0.9
2,126,351 - CCNA_01981 0.61 +0.3
2,126,358 - CCNA_01981 0.62 -0.3
2,126,373 - CCNA_01981 0.62 -0.9
2,126,385 + CCNA_01981 0.63 -0.3
2,126,446 - CCNA_01981 0.66 +0.4
2,126,526 - CCNA_01981 0.69 -1.4
2,126,535 - CCNA_01981 0.70 +0.6
2,126,609 - CCNA_01981 0.73 +0.4
2,126,704 - CCNA_01981 0.78 +0.1
2,126,724 - CCNA_01981 0.79 -0.2
2,126,742 + CCNA_01981 0.79 +0.7
2,126,788 - CCNA_01981 0.81 -1.0
2,126,874 - CCNA_01981 0.85 +0.1
2,126,915 - CCNA_01981 0.87 +1.0
2,126,944 + CCNA_01981 0.89 -0.7
2,127,026 + -1.8
2,127,027 - +0.8
2,127,113 + +0.4
2,127,238 + CCNA_03960 0.31 -1.0
2,127,238 + CCNA_03960 0.31 -0.8
2,127,342 + -1.2

Or see this region's nucleotide sequence