Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03940

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00796 and CCNA_03940 are separated by 109 nucleotidesCCNA_03940 and CCNA_00798 are separated by 8 nucleotides CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285 _03940 CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 Position (kb) 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.185 kb on - strand, within CCNA_00796at 860.202 kb on - strand, within CCNA_00796at 860.217 kb on + strand, within CCNA_00796at 860.225 kb on + strand, within CCNA_00796at 860.225 kb on - strand, within CCNA_00796at 860.225 kb on - strand, within CCNA_00796at 860.249 kb on + strand, within CCNA_00796at 860.257 kb on - strand, within CCNA_00796at 860.268 kb on + strand, within CCNA_00796at 860.268 kb on + strand, within CCNA_00796at 860.313 kb on - strand, within CCNA_00796at 860.313 kb on - strand, within CCNA_00796at 860.347 kb on + strand, within CCNA_00796at 860.347 kb on + strand, within CCNA_00796at 860.461 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.498 kb on - strand, within CCNA_00796at 860.498 kb on - strand, within CCNA_00796at 860.559 kb on - strand, within CCNA_00796at 860.590 kb on - strand, within CCNA_00796at 860.615 kb on + strand, within CCNA_00796at 860.629 kb on - strand, within CCNA_00796at 860.677 kb on - strand, within CCNA_00796at 860.679 kb on + strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.697 kb on - strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.731 kb on + strand, within CCNA_00796at 860.739 kb on - strand, within CCNA_00796at 860.742 kb on + strand, within CCNA_00796at 860.845 kb on + strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.856 kb on + strand, within CCNA_00796at 860.858 kb on - strand, within CCNA_00796at 860.886 kb on + strand, within CCNA_00796at 860.891 kb on + strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 861.019 kb on + strandat 861.028 kb on + strandat 861.038 kb on + strandat 861.082 kb on - strandat 861.099 kb on + strandat 861.106 kb on - strandat 861.107 kb on - strandat 861.124 kb on + strandat 861.124 kb on + strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.174 kb on - strandat 861.252 kb on + strand, within CCNA_03940at 861.252 kb on + strand, within CCNA_03940at 861.259 kb on + strand, within CCNA_03940at 861.260 kb on - strand, within CCNA_03940at 861.300 kb on - strandat 861.424 kb on - strandat 861.462 kb on - strand, within CCNA_00798at 861.472 kb on + strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.529 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.542 kb on - strand, within CCNA_00798at 861.594 kb on + strand, within CCNA_00798at 861.594 kb on + strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.614 kb on - strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.706 kb on - strand, within CCNA_00798at 861.720 kb on - strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.772 kb on - strand, within CCNA_00798at 861.788 kb on + strand, within CCNA_00798at 861.797 kb on - strand, within CCNA_00798at 861.832 kb on + strand, within CCNA_00798at 861.840 kb on - strand, within CCNA_00798at 861.842 kb on + strand, within CCNA_00798at 861.866 kb on + strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.896 kb on - strand, within CCNA_00798at 861.912 kb on - strand, within CCNA_00798at 861.927 kb on - strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.951 kb on - strand, within CCNA_00798at 861.973 kb on + strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.981 kb on - strand, within CCNA_00798at 861.983 kb on + strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.049 kb on - strand, within CCNA_00798at 862.058 kb on - strand, within CCNA_00798at 862.063 kb on - strand, within CCNA_00798at 862.065 kb on + strand, within CCNA_00798at 862.073 kb on - strand, within CCNA_00798at 862.144 kb on + strand, within CCNA_00798at 862.169 kb on + strand, within CCNA_00798at 862.169 kb on + strand, within CCNA_00798at 862.235 kb on + strand, within CCNA_00798at 862.236 kb on - strand, within CCNA_00798at 862.277 kb on - strand, within CCNA_00798at 862.277 kb on - strand, within CCNA_00798

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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860,185 - CCNA_00796 0.41 -0.4
860,202 - CCNA_00796 0.42 +0.7
860,217 + CCNA_00796 0.43 +0.0
860,225 + CCNA_00796 0.43 -0.7
860,225 - CCNA_00796 0.43 -0.4
860,225 - CCNA_00796 0.43 +0.4
860,249 + CCNA_00796 0.45 +0.0
860,257 - CCNA_00796 0.45 +0.2
860,268 + CCNA_00796 0.46 +1.2
860,268 + CCNA_00796 0.46 -1.4
860,313 - CCNA_00796 0.49 +0.3
860,313 - CCNA_00796 0.49 +0.4
860,347 + CCNA_00796 0.51 -0.5
860,347 + CCNA_00796 0.51 +0.1
860,461 + CCNA_00796 0.59 +0.2
860,490 + CCNA_00796 0.61 -1.4
860,498 - CCNA_00796 0.62 -0.8
860,498 - CCNA_00796 0.62 +0.0
860,559 - CCNA_00796 0.66 -0.7
860,590 - CCNA_00796 0.68 +0.2
860,615 + CCNA_00796 0.69 +0.9
860,629 - CCNA_00796 0.70 +0.7
860,677 - CCNA_00796 0.74 +0.4
860,679 + CCNA_00796 0.74 +0.8
860,687 - CCNA_00796 0.74 -0.8
860,687 - CCNA_00796 0.74 +0.4
860,697 - CCNA_00796 0.75 -0.7
860,731 + CCNA_00796 0.77 +0.3
860,731 + CCNA_00796 0.77 -2.3
860,731 + CCNA_00796 0.77 +0.6
860,739 - CCNA_00796 0.78 -0.1
860,742 + CCNA_00796 0.78 -1.6
860,845 + CCNA_00796 0.85 -0.6
860,850 + CCNA_00796 0.85 -0.4
860,850 + CCNA_00796 0.85 +0.5
860,856 + CCNA_00796 0.86 +1.5
860,858 - CCNA_00796 0.86 -0.4
860,886 + CCNA_00796 0.88 -0.3
860,891 + CCNA_00796 0.88 -0.2
860,894 - CCNA_00796 0.88 +1.4
860,894 - CCNA_00796 0.88 +0.6
860,894 - CCNA_00796 0.88 +0.1
860,894 - CCNA_00796 0.88 +0.1
860,894 - CCNA_00796 0.88 +0.6
860,901 + CCNA_00796 0.89 +0.2
860,901 + CCNA_00796 0.89 +0.5
860,901 + CCNA_00796 0.89 -0.3
860,901 + CCNA_00796 0.89 -1.4
860,909 - CCNA_00796 0.89 +0.4
860,909 - CCNA_00796 0.89 -0.2
860,909 - CCNA_00796 0.89 -0.4
860,909 - CCNA_00796 0.89 +0.3
860,909 - CCNA_00796 0.89 +0.1
861,019 + -0.7
861,028 + -1.5
861,038 + -0.9
861,082 - -0.7
861,099 + -1.4
861,106 - -0.1
861,107 - +0.2
861,124 + -0.2
861,124 + +0.6
861,132 - -1.1
861,132 - -0.2
861,132 - +1.3
861,132 - -0.5
861,174 - +0.1
861,252 + CCNA_03940 0.69 +0.1
861,252 + CCNA_03940 0.69 -0.2
861,259 + CCNA_03940 0.75 -0.7
861,260 - CCNA_03940 0.76 -0.4
861,300 - -0.8
861,424 - +0.0
861,462 - CCNA_00798 0.11 +0.3
861,472 + CCNA_00798 0.11 -0.3
861,482 - CCNA_00798 0.12 -0.1
861,529 + CCNA_00798 0.15 +0.1
861,539 + CCNA_00798 0.15 -0.3
861,539 + CCNA_00798 0.15 +0.2
861,542 - CCNA_00798 0.16 +0.1
861,594 + CCNA_00798 0.19 -0.4
861,594 + CCNA_00798 0.19 +0.6
861,602 - CCNA_00798 0.19 -0.3
861,614 - CCNA_00798 0.20 -0.0
861,655 + CCNA_00798 0.23 +0.9
861,655 + CCNA_00798 0.23 +0.3
861,655 + CCNA_00798 0.23 +0.8
861,663 - CCNA_00798 0.23 +0.0
861,663 - CCNA_00798 0.23 +0.8
861,663 - CCNA_00798 0.23 -0.1
861,663 - CCNA_00798 0.23 +0.9
861,706 - CCNA_00798 0.26 +0.2
861,720 - CCNA_00798 0.27 +0.2
861,764 + CCNA_00798 0.29 -0.0
861,772 - CCNA_00798 0.30 +1.0
861,788 + CCNA_00798 0.31 +1.0
861,797 - CCNA_00798 0.31 -2.5
861,832 + CCNA_00798 0.34 -0.5
861,840 - CCNA_00798 0.34 +1.1
861,842 + CCNA_00798 0.34 -0.4
861,866 + CCNA_00798 0.36 -3.4
861,874 - CCNA_00798 0.36 +0.4
861,874 - CCNA_00798 0.36 -0.6
861,896 - CCNA_00798 0.38 -0.3
861,912 - CCNA_00798 0.39 -0.3
861,927 - CCNA_00798 0.40 -0.1
861,945 + CCNA_00798 0.41 +0.5
861,951 - CCNA_00798 0.41 +0.4
861,973 + CCNA_00798 0.42 -1.6
861,981 - CCNA_00798 0.43 +0.2
861,981 - CCNA_00798 0.43 +0.3
861,981 - CCNA_00798 0.43 +0.6
861,983 + CCNA_00798 0.43 +0.6
862,013 - CCNA_00798 0.45 +0.3
862,013 - CCNA_00798 0.45 +0.4
862,013 - CCNA_00798 0.45 +0.3
862,049 - CCNA_00798 0.47 -0.6
862,058 - CCNA_00798 0.48 +0.6
862,063 - CCNA_00798 0.48 +0.1
862,065 + CCNA_00798 0.48 -0.1
862,073 - CCNA_00798 0.49 -0.6
862,144 + CCNA_00798 0.53 +1.1
862,169 + CCNA_00798 0.55 -0.2
862,169 + CCNA_00798 0.55 -0.2
862,235 + CCNA_00798 0.59 -0.5
862,236 - CCNA_00798 0.59 +0.9
862,277 - CCNA_00798 0.61 +0.5
862,277 - CCNA_00798 0.61 -0.5

Or see this region's nucleotide sequence