Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03360 and CCNA_03905 are separated by 49 nucleotides CCNA_03905 and CCNA_03273 are separated by 161 nucleotides CCNA_03273 and CCNA_03362 overlap by 14 nucleotides
CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750
_03360
CCNA_03905: CCNA_03905 - hypothetical protein, at 3,539,800 to 3,540,480
_03905
CCNA_03273: CCNA_03273 - hypothetical protein, at 3,540,642 to 3,541,286
_03273
CCNA_03362: CCNA_03362 - ECF-family RNA polymerase sigma factor, at 3,541,273 to 3,541,812
_03362
Position (kb)
3539
3540
3541 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.714 kb on + strand at 3539.778 kb on + strand at 3539.791 kb on - strand at 3539.791 kb on - strand at 3539.791 kb on - strand at 3539.816 kb on + strand at 3539.821 kb on + strand at 3539.840 kb on + strand at 3539.840 kb on + strand at 3539.840 kb on + strand at 3539.848 kb on - strand at 3539.848 kb on - strand at 3539.864 kb on + strand at 3539.869 kb on + strand, within CCNA_03905 at 3539.885 kb on + strand, within CCNA_03905 at 3539.890 kb on + strand, within CCNA_03905 at 3539.893 kb on - strand, within CCNA_03905 at 3539.904 kb on + strand, within CCNA_03905 at 3539.918 kb on - strand, within CCNA_03905 at 3539.926 kb on + strand, within CCNA_03905 at 3539.934 kb on - strand, within CCNA_03905 at 3539.952 kb on + strand, within CCNA_03905 at 3540.008 kb on + strand, within CCNA_03905 at 3540.042 kb on - strand, within CCNA_03905 at 3540.066 kb on + strand, within CCNA_03905 at 3540.081 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.115 kb on + strand, within CCNA_03905 at 3540.115 kb on + strand, within CCNA_03905 at 3540.137 kb on - strand, within CCNA_03905 at 3540.162 kb on + strand, within CCNA_03905 at 3540.170 kb on - strand, within CCNA_03905 at 3540.214 kb on - strand, within CCNA_03905 at 3540.255 kb on + strand, within CCNA_03905 at 3540.257 kb on - strand, within CCNA_03905 at 3540.263 kb on - strand, within CCNA_03905 at 3540.325 kb on + strand, within CCNA_03905 at 3540.330 kb on + strand, within CCNA_03905 at 3540.338 kb on - strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.360 kb on - strand, within CCNA_03905 at 3540.360 kb on - strand, within CCNA_03905 at 3540.395 kb on + strand, within CCNA_03905 at 3540.396 kb on + strand, within CCNA_03905 at 3540.415 kb on - strand at 3540.417 kb on - strand at 3540.464 kb on - strand at 3540.464 kb on - strand at 3540.498 kb on + strand at 3540.499 kb on - strand at 3540.526 kb on + strand at 3540.649 kb on - strand at 3540.673 kb on + strand at 3540.681 kb on - strand at 3540.706 kb on - strand at 3540.708 kb on + strand, within CCNA_03273 at 3540.716 kb on - strand, within CCNA_03273 at 3540.716 kb on - strand, within CCNA_03273 at 3540.727 kb on + strand, within CCNA_03273 at 3540.750 kb on - strand, within CCNA_03273 at 3540.762 kb on - strand, within CCNA_03273 at 3540.824 kb on + strand, within CCNA_03273 at 3540.827 kb on - strand, within CCNA_03273 at 3540.915 kb on - strand, within CCNA_03273 at 3540.949 kb on - strand, within CCNA_03273 at 3540.969 kb on - strand, within CCNA_03273 at 3540.970 kb on - strand, within CCNA_03273 at 3541.003 kb on - strand, within CCNA_03273 at 3541.025 kb on - strand, within CCNA_03273 at 3541.094 kb on - strand, within CCNA_03273 at 3541.110 kb on - strand, within CCNA_03273 at 3541.115 kb on - strand, within CCNA_03273 at 3541.116 kb on + strand, within CCNA_03273 at 3541.131 kb on + strand, within CCNA_03273 at 3541.161 kb on - strand, within CCNA_03273 at 3541.188 kb on + strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.295 kb on + strand at 3541.403 kb on - strand, within CCNA_03362 at 3541.438 kb on + strand, within CCNA_03362 at 3541.441 kb on - strand, within CCNA_03362 at 3541.446 kb on - strand, within CCNA_03362 at 3541.450 kb on + strand, within CCNA_03362 at 3541.453 kb on - strand, within CCNA_03362 at 3541.473 kb on + strand, within CCNA_03362
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,539,714 + -0.1 3,539,778 + +0.8 3,539,791 - +0.2 3,539,791 - -0.2 3,539,791 - +0.0 3,539,816 + +0.4 3,539,821 + +0.5 3,539,840 + -0.7 3,539,840 + -0.7 3,539,840 + +0.2 3,539,848 - +1.2 3,539,848 - +0.0 3,539,864 + +0.1 3,539,869 + CCNA_03905 0.10 +0.4 3,539,885 + CCNA_03905 0.12 -0.1 3,539,890 + CCNA_03905 0.13 +0.0 3,539,893 - CCNA_03905 0.14 +0.0 3,539,904 + CCNA_03905 0.15 +0.1 3,539,918 - CCNA_03905 0.17 -0.0 3,539,926 + CCNA_03905 0.19 +0.2 3,539,934 - CCNA_03905 0.20 +0.1 3,539,952 + CCNA_03905 0.22 +0.6 3,540,008 + CCNA_03905 0.31 -0.1 3,540,042 - CCNA_03905 0.36 +0.4 3,540,066 + CCNA_03905 0.39 -0.4 3,540,081 + CCNA_03905 0.41 +1.3 3,540,097 + CCNA_03905 0.44 +1.1 3,540,097 + CCNA_03905 0.44 -0.8 3,540,105 - CCNA_03905 0.45 +0.4 3,540,105 - CCNA_03905 0.45 +0.9 3,540,115 + CCNA_03905 0.46 -0.7 3,540,115 + CCNA_03905 0.46 -0.4 3,540,137 - CCNA_03905 0.49 +0.4 3,540,162 + CCNA_03905 0.53 -0.1 3,540,170 - CCNA_03905 0.54 +0.7 3,540,214 - CCNA_03905 0.61 +0.4 3,540,255 + CCNA_03905 0.67 +0.0 3,540,257 - CCNA_03905 0.67 +0.1 3,540,263 - CCNA_03905 0.68 +0.5 3,540,325 + CCNA_03905 0.77 +0.0 3,540,330 + CCNA_03905 0.78 -0.0 3,540,338 - CCNA_03905 0.79 -0.0 3,540,352 + CCNA_03905 0.81 -0.6 3,540,352 + CCNA_03905 0.81 -0.3 3,540,360 - CCNA_03905 0.82 -0.0 3,540,360 - CCNA_03905 0.82 +0.2 3,540,395 + CCNA_03905 0.87 +0.1 3,540,396 + CCNA_03905 0.88 -0.4 3,540,415 - +0.3 3,540,417 - +0.4 3,540,464 - +0.1 3,540,464 - +0.4 3,540,498 + -0.5 3,540,499 - -0.2 3,540,526 + -0.2 3,540,649 - -0.5 3,540,673 + -0.3 3,540,681 - -0.9 3,540,706 - -0.2 3,540,708 + CCNA_03273 0.10 -1.4 3,540,716 - CCNA_03273 0.11 -0.1 3,540,716 - CCNA_03273 0.11 -0.7 3,540,727 + CCNA_03273 0.13 -0.7 3,540,750 - CCNA_03273 0.17 -1.7 3,540,762 - CCNA_03273 0.19 -1.4 3,540,824 + CCNA_03273 0.28 -0.6 3,540,827 - CCNA_03273 0.29 -0.3 3,540,915 - CCNA_03273 0.42 -0.4 3,540,949 - CCNA_03273 0.48 -1.1 3,540,969 - CCNA_03273 0.51 -0.1 3,540,970 - CCNA_03273 0.51 -1.8 3,541,003 - CCNA_03273 0.56 -0.9 3,541,025 - CCNA_03273 0.59 +0.9 3,541,094 - CCNA_03273 0.70 -1.1 3,541,110 - CCNA_03273 0.73 -1.3 3,541,115 - CCNA_03273 0.73 +0.4 3,541,116 + CCNA_03273 0.73 -0.3 3,541,131 + CCNA_03273 0.76 +0.1 3,541,161 - CCNA_03273 0.80 -0.5 3,541,188 + CCNA_03273 0.85 +0.7 3,541,196 - CCNA_03273 0.86 -1.1 3,541,196 - CCNA_03273 0.86 +1.1 3,541,196 - CCNA_03273 0.86 -1.4 3,541,196 - CCNA_03273 0.86 -0.5 3,541,295 + -0.6 3,541,403 - CCNA_03362 0.24 +0.1 3,541,438 + CCNA_03362 0.31 -1.1 3,541,441 - CCNA_03362 0.31 -0.9 3,541,446 - CCNA_03362 0.32 -0.1 3,541,450 + CCNA_03362 0.33 -0.2 3,541,453 - CCNA_03362 0.33 -0.0 3,541,473 + CCNA_03362 0.37 -0.8
Or see this region's nucleotide sequence