Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03887

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00598 and CCNA_03887 are separated by 230 nucleotidesCCNA_03887 and CCNA_00600 overlap by 13 nucleotides CCNA_00598: CCNA_00598 - TonB-dependent receptor, at 631,886 to 634,816 _00598 CCNA_03887: CCNA_03887 - hypothetical protein, at 635,047 to 635,673 _03887 CCNA_00600: CCNA_00600 - hypothetical protein, at 635,661 to 636,890 _00600 Position (kb) 635 636Strain fitness (log2 ratio) -2 -1 0 1 2 3at 634.058 kb on + strand, within CCNA_00598at 634.058 kb on + strand, within CCNA_00598at 634.099 kb on + strand, within CCNA_00598at 634.099 kb on + strand, within CCNA_00598at 634.107 kb on - strand, within CCNA_00598at 634.140 kb on + strand, within CCNA_00598at 634.145 kb on + strand, within CCNA_00598at 634.153 kb on - strand, within CCNA_00598at 634.168 kb on + strand, within CCNA_00598at 634.176 kb on - strand, within CCNA_00598at 634.176 kb on - strand, within CCNA_00598at 634.232 kb on + strand, within CCNA_00598at 634.234 kb on - strand, within CCNA_00598at 634.234 kb on - strand, within CCNA_00598at 634.242 kb on - strand, within CCNA_00598at 634.265 kb on - strand, within CCNA_00598at 634.316 kb on + strand, within CCNA_00598at 634.334 kb on + strand, within CCNA_00598at 634.360 kb on + strand, within CCNA_00598at 634.368 kb on - strand, within CCNA_00598at 634.370 kb on + strand, within CCNA_00598at 634.370 kb on + strand, within CCNA_00598at 634.371 kb on + strand, within CCNA_00598at 634.378 kb on - strand, within CCNA_00598at 634.378 kb on - strand, within CCNA_00598at 634.378 kb on - strand, within CCNA_00598at 634.418 kb on + strand, within CCNA_00598at 634.418 kb on + strand, within CCNA_00598at 634.418 kb on + strand, within CCNA_00598at 634.424 kb on + strand, within CCNA_00598at 634.426 kb on - strand, within CCNA_00598at 634.426 kb on - strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.434 kb on + strand, within CCNA_00598at 634.490 kb on + strand, within CCNA_00598at 634.490 kb on + strand, within CCNA_00598at 634.490 kb on + strand, within CCNA_00598at 634.493 kb on - strand, within CCNA_00598at 634.516 kb on + strand, within CCNA_00598at 634.526 kb on - strandat 634.541 kb on + strandat 634.543 kb on - strandat 634.549 kb on - strandat 634.577 kb on + strandat 634.577 kb on + strandat 634.577 kb on + strandat 634.585 kb on - strandat 634.605 kb on - strandat 634.622 kb on + strandat 634.651 kb on + strandat 634.666 kb on + strandat 634.678 kb on - strandat 634.715 kb on - strandat 634.721 kb on + strandat 634.721 kb on + strandat 634.728 kb on - strandat 634.729 kb on - strandat 634.729 kb on - strandat 634.734 kb on + strandat 634.734 kb on + strandat 634.734 kb on + strandat 634.742 kb on + strandat 634.742 kb on - strandat 634.775 kb on + strandat 634.780 kb on + strandat 634.782 kb on - strandat 634.788 kb on - strandat 634.821 kb on + strandat 634.829 kb on - strandat 634.831 kb on - strandat 634.837 kb on + strandat 634.870 kb on + strandat 634.894 kb on + strandat 634.901 kb on + strandat 634.901 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.906 kb on + strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.914 kb on - strandat 634.926 kb on + strandat 634.957 kb on - strandat 634.974 kb on + strandat 634.984 kb on + strandat 634.992 kb on - strandat 635.004 kb on - strandat 635.004 kb on - strandat 635.035 kb on + strandat 635.068 kb on + strandat 635.137 kb on + strand, within CCNA_03887at 635.163 kb on - strand, within CCNA_03887at 635.185 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.208 kb on + strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.216 kb on - strand, within CCNA_03887at 635.239 kb on - strand, within CCNA_03887at 635.315 kb on + strand, within CCNA_03887at 635.376 kb on + strand, within CCNA_03887at 635.429 kb on + strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.452 kb on - strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.469 kb on + strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.477 kb on - strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.487 kb on + strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.495 kb on - strand, within CCNA_03887at 635.534 kb on - strand, within CCNA_03887at 635.583 kb on + strand, within CCNA_03887at 635.653 kb on + strandat 635.659 kb on + strandat 635.659 kb on + strandat 635.660 kb on - strandat 635.660 kb on - strandat 635.661 kb on - strandat 635.667 kb on - strandat 635.676 kb on - strandat 635.695 kb on + strandat 635.729 kb on + strandat 635.741 kb on - strandat 635.786 kb on + strand, within CCNA_00600at 635.794 kb on - strand, within CCNA_00600at 635.815 kb on - strand, within CCNA_00600at 635.834 kb on + strand, within CCNA_00600at 635.874 kb on - strand, within CCNA_00600at 635.885 kb on + strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.893 kb on - strand, within CCNA_00600at 635.894 kb on - strand, within CCNA_00600at 635.923 kb on + strand, within CCNA_00600at 635.931 kb on + strand, within CCNA_00600at 635.951 kb on - strand, within CCNA_00600at 635.984 kb on + strand, within CCNA_00600at 635.986 kb on - strand, within CCNA_00600at 636.045 kb on + strand, within CCNA_00600at 636.053 kb on - strand, within CCNA_00600at 636.069 kb on + strand, within CCNA_00600at 636.079 kb on + strand, within CCNA_00600at 636.082 kb on - strand, within CCNA_00600at 636.100 kb on + strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.108 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.125 kb on - strand, within CCNA_00600at 636.126 kb on - strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.146 kb on + strand, within CCNA_00600at 636.154 kb on - strand, within CCNA_00600at 636.161 kb on + strand, within CCNA_00600at 636.161 kb on - strand, within CCNA_00600at 636.190 kb on - strand, within CCNA_00600at 636.190 kb on - strand, within CCNA_00600at 636.200 kb on - strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.220 kb on + strand, within CCNA_00600at 636.228 kb on - strand, within CCNA_00600at 636.234 kb on + strand, within CCNA_00600at 636.255 kb on + strand, within CCNA_00600at 636.263 kb on - strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.272 kb on + strand, within CCNA_00600at 636.273 kb on + strand, within CCNA_00600at 636.281 kb on - strand, within CCNA_00600at 636.301 kb on + strand, within CCNA_00600at 636.307 kb on - strand, within CCNA_00600at 636.307 kb on - strand, within CCNA_00600at 636.358 kb on - strand, within CCNA_00600at 636.397 kb on - strand, within CCNA_00600at 636.488 kb on - strand, within CCNA_00600at 636.495 kb on + strand, within CCNA_00600at 636.503 kb on - strand, within CCNA_00600at 636.508 kb on - strand, within CCNA_00600at 636.582 kb on + strand, within CCNA_00600at 636.603 kb on + strand, within CCNA_00600at 636.645 kb on - strand, within CCNA_00600at 636.659 kb on + strand, within CCNA_00600at 636.662 kb on - strand, within CCNA_00600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
634,058 + CCNA_00598 0.74 -0.1
634,058 + CCNA_00598 0.74 -0.2
634,099 + CCNA_00598 0.76 -0.6
634,099 + CCNA_00598 0.76 +0.4
634,107 - CCNA_00598 0.76 +0.8
634,140 + CCNA_00598 0.77 -0.1
634,145 + CCNA_00598 0.77 -0.3
634,153 - CCNA_00598 0.77 -0.1
634,168 + CCNA_00598 0.78 +0.9
634,176 - CCNA_00598 0.78 +0.9
634,176 - CCNA_00598 0.78 -0.0
634,232 + CCNA_00598 0.80 +0.1
634,234 - CCNA_00598 0.80 +0.3
634,234 - CCNA_00598 0.80 -0.6
634,242 - CCNA_00598 0.80 -1.2
634,265 - CCNA_00598 0.81 -1.6
634,316 + CCNA_00598 0.83 -0.4
634,334 + CCNA_00598 0.84 -0.5
634,360 + CCNA_00598 0.84 -1.0
634,368 - CCNA_00598 0.85 -1.3
634,370 + CCNA_00598 0.85 -0.3
634,370 + CCNA_00598 0.85 -1.1
634,371 + CCNA_00598 0.85 -0.3
634,378 - CCNA_00598 0.85 -0.8
634,378 - CCNA_00598 0.85 -0.7
634,378 - CCNA_00598 0.85 +0.5
634,418 + CCNA_00598 0.86 +1.8
634,418 + CCNA_00598 0.86 -0.6
634,418 + CCNA_00598 0.86 -0.2
634,424 + CCNA_00598 0.87 -0.0
634,426 - CCNA_00598 0.87 -0.5
634,426 - CCNA_00598 0.87 -1.0
634,434 + CCNA_00598 0.87 -1.4
634,434 + CCNA_00598 0.87 +0.2
634,434 + CCNA_00598 0.87 -0.2
634,490 + CCNA_00598 0.89 -1.0
634,490 + CCNA_00598 0.89 -0.5
634,490 + CCNA_00598 0.89 -0.5
634,493 - CCNA_00598 0.89 +0.4
634,516 + CCNA_00598 0.90 -0.3
634,526 - -1.5
634,541 + -0.2
634,543 - -0.6
634,549 - -0.3
634,577 + +0.5
634,577 + -0.8
634,577 + -0.6
634,585 - +0.6
634,605 - -0.4
634,622 + +0.7
634,651 + -0.6
634,666 + -0.5
634,678 - +0.5
634,715 - +0.2
634,721 + -0.2
634,721 + -0.2
634,728 - +0.4
634,729 - -0.4
634,729 - -0.8
634,734 + -0.8
634,734 + -0.3
634,734 + -0.3
634,742 + -0.7
634,742 - -0.4
634,775 + +0.5
634,780 + -0.7
634,782 - -0.7
634,788 - -0.1
634,821 + -0.4
634,829 - -1.9
634,831 - -0.8
634,837 + -1.8
634,870 + -0.4
634,894 + -0.3
634,901 + +0.3
634,901 + -0.6
634,906 + +0.0
634,906 + -0.4
634,906 + -0.9
634,906 + -1.1
634,906 + -0.5
634,914 - -0.4
634,914 - -0.4
634,914 - +0.5
634,914 - +0.0
634,926 + -0.1
634,957 - -1.0
634,974 + +0.0
634,984 + -0.1
634,992 - +1.6
635,004 - -0.2
635,004 - -1.4
635,035 + -1.4
635,068 + +0.3
635,137 + CCNA_03887 0.14 -1.4
635,163 - CCNA_03887 0.19 -0.8
635,185 + CCNA_03887 0.22 -0.1
635,208 + CCNA_03887 0.26 +0.2
635,208 + CCNA_03887 0.26 -0.2
635,216 - CCNA_03887 0.27 -0.3
635,216 - CCNA_03887 0.27 -1.3
635,239 - CCNA_03887 0.31 -1.7
635,315 + CCNA_03887 0.43 +2.9
635,376 + CCNA_03887 0.52 -0.5
635,429 + CCNA_03887 0.61 +1.0
635,452 - CCNA_03887 0.65 +0.1
635,452 - CCNA_03887 0.65 +0.1
635,452 - CCNA_03887 0.65 -1.2
635,452 - CCNA_03887 0.65 -1.3
635,469 + CCNA_03887 0.67 +1.4
635,469 + CCNA_03887 0.67 +0.2
635,469 + CCNA_03887 0.67 -0.8
635,469 + CCNA_03887 0.67 -0.1
635,469 + CCNA_03887 0.67 +1.2
635,469 + CCNA_03887 0.67 +0.4
635,477 - CCNA_03887 0.69 -1.9
635,477 - CCNA_03887 0.69 -0.8
635,477 - CCNA_03887 0.69 -0.7
635,477 - CCNA_03887 0.69 -0.5
635,477 - CCNA_03887 0.69 +0.6
635,487 + CCNA_03887 0.70 -0.4
635,487 + CCNA_03887 0.70 -0.3
635,487 + CCNA_03887 0.70 +0.4
635,487 + CCNA_03887 0.70 -1.1
635,487 + CCNA_03887 0.70 +1.1
635,487 + CCNA_03887 0.70 -0.1
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 -0.1
635,487 + CCNA_03887 0.70 -0.1
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 +0.2
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 -0.4
635,487 + CCNA_03887 0.70 +0.1
635,487 + CCNA_03887 0.70 -0.2
635,487 + CCNA_03887 0.70 +0.1
635,495 - CCNA_03887 0.71 +0.2
635,495 - CCNA_03887 0.71 +0.9
635,495 - CCNA_03887 0.71 -1.4
635,495 - CCNA_03887 0.71 +0.1
635,495 - CCNA_03887 0.71 +0.3
635,495 - CCNA_03887 0.71 -1.1
635,495 - CCNA_03887 0.71 +1.1
635,495 - CCNA_03887 0.71 -0.0
635,495 - CCNA_03887 0.71 -0.5
635,495 - CCNA_03887 0.71 +0.0
635,495 - CCNA_03887 0.71 -0.8
635,534 - CCNA_03887 0.78 -0.0
635,583 + CCNA_03887 0.85 +0.4
635,653 + +0.7
635,659 + -0.7
635,659 + +0.2
635,660 - -0.1
635,660 - +0.3
635,661 - -0.3
635,667 - -0.9
635,676 - -1.2
635,695 + -0.4
635,729 + -0.3
635,741 - -0.3
635,786 + CCNA_00600 0.10 +1.4
635,794 - CCNA_00600 0.11 -0.5
635,815 - CCNA_00600 0.13 -0.6
635,834 + CCNA_00600 0.14 +2.4
635,874 - CCNA_00600 0.17 -0.7
635,885 + CCNA_00600 0.18 -0.4
635,893 - CCNA_00600 0.19 +0.2
635,893 - CCNA_00600 0.19 -1.4
635,893 - CCNA_00600 0.19 +1.0
635,893 - CCNA_00600 0.19 -0.1
635,894 - CCNA_00600 0.19 +0.9
635,923 + CCNA_00600 0.21 -0.2
635,931 + CCNA_00600 0.22 +0.1
635,951 - CCNA_00600 0.24 -2.2
635,984 + CCNA_00600 0.26 +0.6
635,986 - CCNA_00600 0.26 -0.1
636,045 + CCNA_00600 0.31 +0.0
636,053 - CCNA_00600 0.32 -0.7
636,069 + CCNA_00600 0.33 -0.1
636,079 + CCNA_00600 0.34 +0.0
636,082 - CCNA_00600 0.34 -0.5
636,100 + CCNA_00600 0.36 +0.2
636,108 - CCNA_00600 0.36 +1.3
636,108 - CCNA_00600 0.36 +0.5
636,125 - CCNA_00600 0.38 -0.1
636,125 - CCNA_00600 0.38 -2.2
636,126 - CCNA_00600 0.38 -1.0
636,146 + CCNA_00600 0.39 +0.4
636,146 + CCNA_00600 0.39 -0.6
636,146 + CCNA_00600 0.39 +1.1
636,154 - CCNA_00600 0.40 -0.2
636,161 + CCNA_00600 0.41 -0.1
636,161 - CCNA_00600 0.41 +0.3
636,190 - CCNA_00600 0.43 +0.8
636,190 - CCNA_00600 0.43 +0.2
636,200 - CCNA_00600 0.44 +0.5
636,220 + CCNA_00600 0.45 +0.0
636,220 + CCNA_00600 0.45 +0.2
636,228 - CCNA_00600 0.46 +0.0
636,234 + CCNA_00600 0.47 -0.6
636,255 + CCNA_00600 0.48 +0.9
636,263 - CCNA_00600 0.49 -0.3
636,272 + CCNA_00600 0.50 +0.0
636,272 + CCNA_00600 0.50 +1.9
636,272 + CCNA_00600 0.50 -0.2
636,273 + CCNA_00600 0.50 +0.2
636,281 - CCNA_00600 0.50 +0.4
636,301 + CCNA_00600 0.52 +0.0
636,307 - CCNA_00600 0.53 -0.4
636,307 - CCNA_00600 0.53 +0.2
636,358 - CCNA_00600 0.57 -0.6
636,397 - CCNA_00600 0.60 +0.7
636,488 - CCNA_00600 0.67 +0.4
636,495 + CCNA_00600 0.68 +0.9
636,503 - CCNA_00600 0.68 -0.8
636,508 - CCNA_00600 0.69 +0.6
636,582 + CCNA_00600 0.75 +0.0
636,603 + CCNA_00600 0.77 +1.3
636,645 - CCNA_00600 0.80 +0.2
636,659 + CCNA_00600 0.81 -0.6
636,662 - CCNA_00600 0.81 +0.2

Or see this region's nucleotide sequence