Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03878

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03876 and CCNA_03877 are separated by 258 nucleotidesCCNA_03877 and CCNA_03878 overlap by 52 nucleotidesCCNA_03878 and CCNA_03879 overlap by 4 nucleotides CCNA_03876: CCNA_03876 - transcription termination factor rho, at 4,038,433 to 4,039,866 _03876 CCNA_03877: CCNA_03877 - conserved hypothetical membrane spanning protein, at 4,040,125 to 4,040,640 _03877 CCNA_03878: CCNA_03878 - ferrochelatase, at 4,040,589 to 4,041,632 _03878 CCNA_03879: CCNA_03879 - uroporphyrinogen decarboxylase, at 4,041,629 to 4,042,684 _03879 Position (kb) 4040 4041 4042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4039.966 kb on - strandat 4039.981 kb on + strandat 4040.060 kb on + strandat 4040.068 kb on - strandat 4040.102 kb on + strandat 4040.123 kb on + strandat 4040.602 kb on + strandat 4040.698 kb on + strand, within CCNA_03878at 4040.698 kb on + strand, within CCNA_03878at 4040.706 kb on - strand, within CCNA_03878at 4040.706 kb on - strand, within CCNA_03878at 4040.706 kb on - strand, within CCNA_03878at 4040.706 kb on - strand, within CCNA_03878at 4040.706 kb on - strand, within CCNA_03878at 4041.648 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
4,039,966 - -0.9
4,039,981 + +0.5
4,040,060 + -0.2
4,040,068 - +0.4
4,040,102 + +1.8
4,040,123 + +0.6
4,040,602 + -0.2
4,040,698 + CCNA_03878 0.10 -0.2
4,040,698 + CCNA_03878 0.10 -0.8
4,040,706 - CCNA_03878 0.11 +0.2
4,040,706 - CCNA_03878 0.11 -0.8
4,040,706 - CCNA_03878 0.11 -1.3
4,040,706 - CCNA_03878 0.11 -1.9
4,040,706 - CCNA_03878 0.11 -2.8
4,041,648 - +0.5

Or see this region's nucleotide sequence