Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03857 and CCNA_03858 are separated by 145 nucleotides CCNA_03858 and CCNA_03859 are separated by 61 nucleotides CCNA_03859 and CCNA_03860 are separated by 73 nucleotides CCNA_03860 and CCNA_03861 overlap by 4 nucleotides
CCNA_03857: CCNA_03857 - Tim44-like domain protein, at 4,020,965 to 4,021,567
_03857
CCNA_03858: CCNA_03858 - protein translocase subunit secB, at 4,021,713 to 4,022,204
_03858
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
Position (kb)
4022
4023 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4021.296 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.304 kb on - strand, within CCNA_03857 at 4021.399 kb on - strand, within CCNA_03857 at 4021.413 kb on - strand, within CCNA_03857 at 4021.452 kb on + strand, within CCNA_03857 at 4021.502 kb on - strand, within CCNA_03857 at 4021.583 kb on + strand at 4021.591 kb on - strand at 4021.591 kb on - strand at 4021.616 kb on + strand at 4021.633 kb on - strand at 4021.650 kb on - strand at 4021.729 kb on + strand at 4021.749 kb on - strand at 4021.751 kb on + strand at 4021.782 kb on - strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.979 kb on + strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4022.000 kb on - strand, within CCNA_03858 at 4022.002 kb on - strand, within CCNA_03858 at 4022.143 kb on - strand, within CCNA_03858 at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.169 kb on + strand at 4022.177 kb on - strand at 4022.198 kb on + strand at 4022.264 kb on + strand at 4022.285 kb on - strand at 4022.404 kb on - strand, within CCNA_03859 at 4022.404 kb on - strand, within CCNA_03859 at 4022.420 kb on - strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.440 kb on - strand, within CCNA_03859 at 4022.449 kb on + strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.576 kb on - strand, within CCNA_03859 at 4022.799 kb on + strand, within CCNA_03859 at 4022.936 kb on - strand at 4022.954 kb on - strand at 4022.957 kb on - strand at 4022.970 kb on + strand at 4022.987 kb on - strand at 4022.992 kb on - strand at 4022.992 kb on - strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.031 kb on + strand at 4023.181 kb on - strand, within CCNA_03860 at 4023.181 kb on - strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.211 kb on - strand, within CCNA_03860 at 4023.216 kb on + strand, within CCNA_03860 at 4023.238 kb on + strand, within CCNA_03860 at 4023.306 kb on - strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.416 kb on + strand, within CCNA_03860 at 4023.424 kb on - strand, within CCNA_03860 at 4023.523 kb on - strand at 4023.548 kb on + strand at 4023.823 kb on - strand, within CCNA_03861
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 4,021,296 + CCNA_03857 0.55 -1.7 4,021,296 + CCNA_03857 0.55 +0.3 4,021,304 - CCNA_03857 0.56 -0.3 4,021,399 - CCNA_03857 0.72 +0.5 4,021,413 - CCNA_03857 0.74 -0.3 4,021,452 + CCNA_03857 0.81 -0.6 4,021,502 - CCNA_03857 0.89 +0.2 4,021,583 + -1.1 4,021,591 - -0.9 4,021,591 - +1.6 4,021,616 + -0.2 4,021,633 - -0.1 4,021,650 - +1.0 4,021,729 + +0.6 4,021,749 - +0.5 4,021,751 + +0.4 4,021,782 - CCNA_03858 0.14 +0.1 4,021,910 + CCNA_03858 0.40 +0.8 4,021,910 + CCNA_03858 0.40 +0.1 4,021,979 + CCNA_03858 0.54 -0.8 4,021,987 - CCNA_03858 0.56 +0.5 4,021,987 - CCNA_03858 0.56 -1.6 4,021,987 - CCNA_03858 0.56 +0.2 4,021,987 - CCNA_03858 0.56 +0.6 4,022,000 - CCNA_03858 0.58 -0.1 4,022,002 - CCNA_03858 0.59 +0.6 4,022,143 - CCNA_03858 0.87 +0.3 4,022,158 - +0.3 4,022,158 - +1.1 4,022,158 - +0.2 4,022,158 - +0.2 4,022,169 + -0.3 4,022,177 - +0.4 4,022,198 + +0.1 4,022,264 + +0.8 4,022,285 - -0.7 4,022,404 - CCNA_03859 0.20 +0.9 4,022,404 - CCNA_03859 0.20 -1.1 4,022,420 - CCNA_03859 0.22 -1.3 4,022,432 + CCNA_03859 0.24 -1.2 4,022,432 + CCNA_03859 0.24 +0.6 4,022,440 - CCNA_03859 0.25 +0.0 4,022,449 + CCNA_03859 0.27 -1.0 4,022,560 - CCNA_03859 0.43 -0.4 4,022,560 - CCNA_03859 0.43 +0.6 4,022,576 - CCNA_03859 0.45 +0.0 4,022,799 + CCNA_03859 0.78 +0.0 4,022,936 - -0.2 4,022,954 - +0.0 4,022,957 - +1.2 4,022,970 + -0.3 4,022,987 - +1.6 4,022,992 - +0.2 4,022,992 - -1.3 4,023,001 + -1.4 4,023,001 + +0.9 4,023,001 + +0.1 4,023,001 + -0.7 4,023,001 + +0.5 4,023,001 + +0.7 4,023,001 + -0.0 4,023,001 + +0.7 4,023,009 - -0.8 4,023,009 - +0.7 4,023,009 - +0.2 4,023,009 - +0.4 4,023,009 - +0.2 4,023,009 - +0.3 4,023,031 + -0.4 4,023,181 - CCNA_03860 0.30 -1.1 4,023,181 - CCNA_03860 0.30 -0.3 4,023,203 + CCNA_03860 0.35 -0.8 4,023,203 + CCNA_03860 0.35 -0.7 4,023,211 - CCNA_03860 0.36 -2.9 4,023,216 + CCNA_03860 0.37 -1.1 4,023,238 + CCNA_03860 0.42 +1.0 4,023,306 - CCNA_03860 0.55 +0.1 4,023,341 + CCNA_03860 0.62 -0.4 4,023,349 - CCNA_03860 0.63 +2.0 4,023,416 + CCNA_03860 0.76 +0.1 4,023,424 - CCNA_03860 0.78 +0.6 4,023,523 - -0.2 4,023,548 + +0.2 4,023,823 - CCNA_03861 0.44 -1.4
Or see this region's nucleotide sequence