Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03831 and CCNA_03832 are separated by 16 nucleotides CCNA_03832 and CCNA_03833 are separated by 17 nucleotides CCNA_03833 and CCNA_03834 are separated by 65 nucleotides
CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351
_03831
CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976
_03832
CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809
_03833
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
Position (kb)
3997
3998
3999 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3997.064 kb on - strand, within CCNA_03831 at 3997.103 kb on - strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.114 kb on - strand, within CCNA_03831 at 3997.251 kb on + strand at 3997.259 kb on - strand at 3997.312 kb on + strand at 3997.312 kb on + strand at 3997.320 kb on - strand at 3997.360 kb on - strand at 3997.378 kb on + strand at 3997.386 kb on - strand at 3997.386 kb on - strand at 3997.416 kb on - strand at 3997.483 kb on + strand, within CCNA_03832 at 3997.492 kb on + strand, within CCNA_03832 at 3997.500 kb on - strand, within CCNA_03832 at 3997.514 kb on - strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.797 kb on + strand, within CCNA_03832 at 3997.805 kb on - strand, within CCNA_03832 at 3997.884 kb on + strand, within CCNA_03832 at 3997.892 kb on - strand, within CCNA_03832 at 3997.941 kb on - strand at 3997.958 kb on - strand at 3997.961 kb on + strand at 3997.961 kb on + strand at 3997.976 kb on + strand at 3997.986 kb on + strand at 3997.991 kb on + strand at 3997.992 kb on + strand at 3998.000 kb on - strand at 3998.000 kb on - strand at 3998.831 kb on + strand at 3998.873 kb on + strand at 3998.881 kb on - strand at 3998.901 kb on - strand at 3998.902 kb on - strand at 3998.948 kb on - strand at 3998.969 kb on - strand at 3998.969 kb on - strand at 3998.979 kb on - strand at 3998.999 kb on + strand at 3999.007 kb on - strand at 3999.031 kb on - strand at 3999.036 kb on + strand at 3999.042 kb on + strand at 3999.051 kb on + strand at 3999.074 kb on + strand, within CCNA_03834 at 3999.094 kb on + strand, within CCNA_03834 at 3999.117 kb on - strand, within CCNA_03834 at 3999.151 kb on + strand, within CCNA_03834 at 3999.167 kb on + strand, within CCNA_03834 at 3999.169 kb on - strand, within CCNA_03834 at 3999.190 kb on + strand, within CCNA_03834 at 3999.198 kb on - strand, within CCNA_03834 at 3999.218 kb on - strand, within CCNA_03834 at 3999.241 kb on + strand, within CCNA_03834 at 3999.249 kb on - strand, within CCNA_03834 at 3999.352 kb on - strand, within CCNA_03834 at 3999.375 kb on + strand, within CCNA_03834 at 3999.380 kb on + strand, within CCNA_03834 at 3999.383 kb on - strand, within CCNA_03834 at 3999.404 kb on - strand, within CCNA_03834 at 3999.433 kb on - strand, within CCNA_03834 at 3999.435 kb on + strand, within CCNA_03834 at 3999.436 kb on + strand, within CCNA_03834 at 3999.475 kb on - strand, within CCNA_03834 at 3999.524 kb on - strand, within CCNA_03834 at 3999.524 kb on - strand, within CCNA_03834 at 3999.543 kb on + strand, within CCNA_03834 at 3999.551 kb on + strand, within CCNA_03834 at 3999.562 kb on + strand, within CCNA_03834 at 3999.562 kb on + strand, within CCNA_03834 at 3999.570 kb on - strand, within CCNA_03834 at 3999.593 kb on - strand, within CCNA_03834 at 3999.607 kb on - strand, within CCNA_03834 at 3999.607 kb on - strand, within CCNA_03834 at 3999.607 kb on - strand, within CCNA_03834 at 3999.611 kb on - strand, within CCNA_03834 at 3999.666 kb on + strand, within CCNA_03834 at 3999.668 kb on + strand, within CCNA_03834 at 3999.674 kb on - strand, within CCNA_03834 at 3999.676 kb on - strand, within CCNA_03834 at 3999.691 kb on + strand, within CCNA_03834 at 3999.767 kb on + strand, within CCNA_03834
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,997,064 - CCNA_03831 0.82 +0.1 3,997,103 - CCNA_03831 0.84 +0.3 3,997,106 + CCNA_03831 0.85 -0.1 3,997,106 + CCNA_03831 0.85 +0.7 3,997,114 - CCNA_03831 0.85 +0.6 3,997,251 + +0.1 3,997,259 - -0.8 3,997,312 + -0.4 3,997,312 + -0.1 3,997,320 - +0.2 3,997,360 - -2.9 3,997,378 + -0.7 3,997,386 - -0.8 3,997,386 - +0.1 3,997,416 - -0.1 3,997,483 + CCNA_03832 0.19 +1.0 3,997,492 + CCNA_03832 0.20 -0.6 3,997,500 - CCNA_03832 0.22 +0.3 3,997,514 - CCNA_03832 0.24 +0.0 3,997,538 + CCNA_03832 0.28 -0.7 3,997,538 + CCNA_03832 0.28 -0.1 3,997,629 + CCNA_03832 0.43 -0.3 3,997,797 + CCNA_03832 0.70 +0.4 3,997,805 - CCNA_03832 0.72 -0.5 3,997,884 + CCNA_03832 0.85 -1.0 3,997,892 - CCNA_03832 0.86 -1.8 3,997,941 - +0.4 3,997,958 - +0.0 3,997,961 + +0.1 3,997,961 + +0.5 3,997,976 + +0.6 3,997,986 + -0.4 3,997,991 + -0.3 3,997,992 + -0.1 3,998,000 - -0.0 3,998,000 - +0.6 3,998,831 + -1.5 3,998,873 + +1.1 3,998,881 - +0.4 3,998,901 - -0.3 3,998,902 - +0.0 3,998,948 - +0.3 3,998,969 - +1.4 3,998,969 - -1.0 3,998,979 - -1.6 3,998,999 + -0.2 3,999,007 - -0.0 3,999,031 - -0.3 3,999,036 + +0.8 3,999,042 + -0.6 3,999,051 + -0.1 3,999,074 + CCNA_03834 0.11 -0.1 3,999,094 + CCNA_03834 0.12 -0.0 3,999,117 - CCNA_03834 0.14 -0.0 3,999,151 + CCNA_03834 0.15 -0.7 3,999,167 + CCNA_03834 0.16 -0.7 3,999,169 - CCNA_03834 0.16 -0.2 3,999,190 + CCNA_03834 0.18 -1.1 3,999,198 - CCNA_03834 0.18 -0.3 3,999,218 - CCNA_03834 0.19 -0.3 3,999,241 + CCNA_03834 0.20 +1.1 3,999,249 - CCNA_03834 0.21 -1.7 3,999,352 - CCNA_03834 0.27 -0.8 3,999,375 + CCNA_03834 0.28 -0.1 3,999,380 + CCNA_03834 0.28 -0.2 3,999,383 - CCNA_03834 0.28 +0.2 3,999,404 - CCNA_03834 0.30 +0.1 3,999,433 - CCNA_03834 0.31 -0.2 3,999,435 + CCNA_03834 0.31 +0.6 3,999,436 + CCNA_03834 0.31 +0.4 3,999,475 - CCNA_03834 0.34 +0.3 3,999,524 - CCNA_03834 0.36 +0.5 3,999,524 - CCNA_03834 0.36 +0.4 3,999,543 + CCNA_03834 0.37 -1.1 3,999,551 + CCNA_03834 0.38 -0.3 3,999,562 + CCNA_03834 0.38 -0.5 3,999,562 + CCNA_03834 0.38 -1.6 3,999,570 - CCNA_03834 0.39 +0.0 3,999,593 - CCNA_03834 0.40 +0.2 3,999,607 - CCNA_03834 0.41 +0.2 3,999,607 - CCNA_03834 0.41 +0.2 3,999,607 - CCNA_03834 0.41 +1.7 3,999,611 - CCNA_03834 0.41 +0.1 3,999,666 + CCNA_03834 0.44 -0.3 3,999,668 + CCNA_03834 0.44 -2.4 3,999,674 - CCNA_03834 0.45 -0.1 3,999,676 - CCNA_03834 0.45 -0.3 3,999,691 + CCNA_03834 0.46 +0.6 3,999,767 + CCNA_03834 0.50 +0.3
Or see this region's nucleotide sequence