Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03792

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03790 and CCNA_03791 are separated by 5 nucleotidesCCNA_03791 and CCNA_03792 are separated by 100 nucleotidesCCNA_03792 and CCNA_03793 are separated by 3 nucleotides CCNA_03790: CCNA_03790 - hypothetical protein, at 3,955,324 to 3,955,599 _03790 CCNA_03791: CCNA_03791 - MarR-family transcriptional regulator, at 3,955,605 to 3,956,165 _03791 CCNA_03792: CCNA_03792 - intracellular septation protein, at 3,956,266 to 3,956,886 _03792 CCNA_03793: CCNA_03793 - cell division protein FtsY, at 3,956,890 to 3,957,831 _03793 Position (kb) 3956 3957Strain fitness (log2 ratio) -1 0 1 2at 3955.282 kb on - strandat 3955.321 kb on + strandat 3955.429 kb on + strand, within CCNA_03790at 3955.429 kb on + strand, within CCNA_03790at 3955.429 kb on + strand, within CCNA_03790at 3955.437 kb on - strand, within CCNA_03790at 3955.437 kb on - strand, within CCNA_03790at 3955.437 kb on - strand, within CCNA_03790at 3955.495 kb on + strand, within CCNA_03790at 3955.559 kb on + strand, within CCNA_03790at 3955.632 kb on - strandat 3955.702 kb on + strand, within CCNA_03791at 3955.710 kb on - strand, within CCNA_03791at 3955.710 kb on - strand, within CCNA_03791at 3955.748 kb on - strand, within CCNA_03791at 3955.755 kb on - strand, within CCNA_03791at 3955.864 kb on + strand, within CCNA_03791at 3955.864 kb on + strand, within CCNA_03791at 3955.864 kb on + strand, within CCNA_03791at 3955.864 kb on + strand, within CCNA_03791at 3955.864 kb on + strand, within CCNA_03791at 3955.872 kb on - strand, within CCNA_03791at 3955.872 kb on - strand, within CCNA_03791at 3955.872 kb on - strand, within CCNA_03791at 3955.872 kb on - strand, within CCNA_03791at 3955.872 kb on - strand, within CCNA_03791at 3955.888 kb on - strand, within CCNA_03791at 3955.890 kb on + strand, within CCNA_03791at 3955.893 kb on - strand, within CCNA_03791at 3955.893 kb on - strand, within CCNA_03791at 3955.893 kb on - strand, within CCNA_03791at 3955.905 kb on - strand, within CCNA_03791at 3955.911 kb on - strand, within CCNA_03791at 3955.943 kb on + strand, within CCNA_03791at 3955.943 kb on + strand, within CCNA_03791at 3955.951 kb on - strand, within CCNA_03791at 3955.951 kb on - strand, within CCNA_03791at 3955.965 kb on + strand, within CCNA_03791at 3955.979 kb on - strand, within CCNA_03791at 3956.013 kb on + strand, within CCNA_03791at 3956.049 kb on - strand, within CCNA_03791at 3956.102 kb on + strand, within CCNA_03791at 3956.103 kb on - strand, within CCNA_03791at 3956.105 kb on - strand, within CCNA_03791at 3956.142 kb on - strandat 3956.155 kb on + strandat 3956.157 kb on - strandat 3956.163 kb on - strandat 3956.173 kb on + strandat 3956.178 kb on + strandat 3956.189 kb on + strandat 3956.189 kb on + strandat 3956.197 kb on - strandat 3956.197 kb on - strandat 3956.197 kb on - strandat 3956.200 kb on - strandat 3956.202 kb on - strandat 3956.213 kb on - strandat 3956.356 kb on + strand, within CCNA_03792at 3956.359 kb on - strand, within CCNA_03792at 3956.390 kb on - strand, within CCNA_03792at 3956.406 kb on - strand, within CCNA_03792at 3956.409 kb on + strand, within CCNA_03792at 3956.409 kb on + strand, within CCNA_03792at 3956.462 kb on + strand, within CCNA_03792at 3956.472 kb on + strand, within CCNA_03792at 3956.472 kb on + strand, within CCNA_03792at 3956.472 kb on + strand, within CCNA_03792at 3956.472 kb on + strand, within CCNA_03792at 3956.478 kb on + strand, within CCNA_03792at 3956.480 kb on - strand, within CCNA_03792at 3956.481 kb on - strand, within CCNA_03792at 3956.486 kb on - strand, within CCNA_03792at 3956.503 kb on + strand, within CCNA_03792at 3956.511 kb on - strand, within CCNA_03792at 3956.511 kb on - strand, within CCNA_03792at 3956.540 kb on + strand, within CCNA_03792at 3956.548 kb on - strand, within CCNA_03792at 3956.550 kb on - strand, within CCNA_03792at 3956.577 kb on + strand, within CCNA_03792at 3956.605 kb on - strand, within CCNA_03792at 3956.629 kb on + strand, within CCNA_03792at 3956.642 kb on - strand, within CCNA_03792at 3956.695 kb on + strand, within CCNA_03792at 3956.759 kb on + strand, within CCNA_03792at 3956.832 kb on - strandat 3956.866 kb on - strandat 3956.884 kb on - strandat 3956.896 kb on - strandat 3956.896 kb on - strandat 3957.840 kb on + strandat 3957.868 kb on - strandat 3957.879 kb on + strandat 3957.886 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,955,282 - -1.6
3,955,321 + +0.3
3,955,429 + CCNA_03790 0.38 -0.3
3,955,429 + CCNA_03790 0.38 -1.1
3,955,429 + CCNA_03790 0.38 -0.2
3,955,437 - CCNA_03790 0.41 +1.3
3,955,437 - CCNA_03790 0.41 +0.0
3,955,437 - CCNA_03790 0.41 -1.2
3,955,495 + CCNA_03790 0.62 -0.7
3,955,559 + CCNA_03790 0.85 +0.5
3,955,632 - -0.6
3,955,702 + CCNA_03791 0.17 -0.2
3,955,710 - CCNA_03791 0.19 +0.2
3,955,710 - CCNA_03791 0.19 -0.7
3,955,748 - CCNA_03791 0.25 -0.5
3,955,755 - CCNA_03791 0.27 +0.6
3,955,864 + CCNA_03791 0.46 -0.0
3,955,864 + CCNA_03791 0.46 -0.3
3,955,864 + CCNA_03791 0.46 +0.1
3,955,864 + CCNA_03791 0.46 -0.5
3,955,864 + CCNA_03791 0.46 +0.9
3,955,872 - CCNA_03791 0.48 -0.1
3,955,872 - CCNA_03791 0.48 +0.9
3,955,872 - CCNA_03791 0.48 -1.2
3,955,872 - CCNA_03791 0.48 -0.7
3,955,872 - CCNA_03791 0.48 +0.4
3,955,888 - CCNA_03791 0.50 +0.2
3,955,890 + CCNA_03791 0.51 +0.8
3,955,893 - CCNA_03791 0.51 +1.0
3,955,893 - CCNA_03791 0.51 +0.7
3,955,893 - CCNA_03791 0.51 -0.1
3,955,905 - CCNA_03791 0.53 -0.3
3,955,911 - CCNA_03791 0.55 -0.1
3,955,943 + CCNA_03791 0.60 -0.2
3,955,943 + CCNA_03791 0.60 +0.2
3,955,951 - CCNA_03791 0.62 -0.6
3,955,951 - CCNA_03791 0.62 -0.2
3,955,965 + CCNA_03791 0.64 +0.8
3,955,979 - CCNA_03791 0.67 +0.8
3,956,013 + CCNA_03791 0.73 +0.1
3,956,049 - CCNA_03791 0.79 -0.7
3,956,102 + CCNA_03791 0.89 -0.3
3,956,103 - CCNA_03791 0.89 -0.9
3,956,105 - CCNA_03791 0.89 -0.2
3,956,142 - +0.7
3,956,155 + -0.4
3,956,157 - -0.5
3,956,163 - -0.1
3,956,173 + -0.3
3,956,178 + -1.7
3,956,189 + -0.6
3,956,189 + +0.5
3,956,197 - +0.1
3,956,197 - +2.2
3,956,197 - -0.4
3,956,200 - +0.1
3,956,202 - +0.8
3,956,213 - +0.1
3,956,356 + CCNA_03792 0.14 -0.3
3,956,359 - CCNA_03792 0.15 +0.9
3,956,390 - CCNA_03792 0.20 +0.4
3,956,406 - CCNA_03792 0.23 +0.2
3,956,409 + CCNA_03792 0.23 -0.2
3,956,409 + CCNA_03792 0.23 +0.0
3,956,462 + CCNA_03792 0.32 +0.2
3,956,472 + CCNA_03792 0.33 -0.1
3,956,472 + CCNA_03792 0.33 -0.4
3,956,472 + CCNA_03792 0.33 +2.0
3,956,472 + CCNA_03792 0.33 +0.6
3,956,478 + CCNA_03792 0.34 +1.0
3,956,480 - CCNA_03792 0.34 +0.6
3,956,481 - CCNA_03792 0.35 -0.4
3,956,486 - CCNA_03792 0.35 -0.2
3,956,503 + CCNA_03792 0.38 -0.1
3,956,511 - CCNA_03792 0.39 +0.0
3,956,511 - CCNA_03792 0.39 +0.3
3,956,540 + CCNA_03792 0.44 +0.6
3,956,548 - CCNA_03792 0.45 -0.0
3,956,550 - CCNA_03792 0.46 -0.0
3,956,577 + CCNA_03792 0.50 +0.0
3,956,605 - CCNA_03792 0.55 +0.1
3,956,629 + CCNA_03792 0.58 -0.2
3,956,642 - CCNA_03792 0.61 -0.2
3,956,695 + CCNA_03792 0.69 -1.3
3,956,759 + CCNA_03792 0.79 -1.1
3,956,832 - -0.1
3,956,866 - +0.7
3,956,884 - -0.2
3,956,896 - +0.2
3,956,896 - +0.2
3,957,840 + +0.7
3,957,868 - +0.1
3,957,879 + +0.3
3,957,886 + -0.7

Or see this region's nucleotide sequence