Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03730 and CCNA_03731 overlap by 4 nucleotides CCNA_03731 and CCNA_03732 are separated by 98 nucleotides CCNA_03732 and CCNA_03733 overlap by 17 nucleotides
CCNA_03730: CCNA_03730 - dTDP-4-dehydrorhamnose reductase, at 3,897,870 to 3,898,751
_03730
CCNA_03731: CCNA_03731 - histidinol phosphatase-family protein, at 3,898,748 to 3,899,293
_03731
CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552
_03732
CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846
_03733
Position (kb)
3899
3900
3901 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3898.402 kb on - strand, within CCNA_03730 at 3898.420 kb on - strand, within CCNA_03730 at 3898.437 kb on + strand, within CCNA_03730 at 3898.445 kb on - strand, within CCNA_03730 at 3898.445 kb on - strand, within CCNA_03730 at 3898.499 kb on - strand, within CCNA_03730 at 3898.499 kb on - strand, within CCNA_03730 at 3898.549 kb on + strand, within CCNA_03730 at 3898.557 kb on - strand, within CCNA_03730 at 3898.566 kb on - strand, within CCNA_03730 at 3898.648 kb on - strand, within CCNA_03730 at 3898.657 kb on + strand, within CCNA_03730 at 3898.661 kb on - strand, within CCNA_03730 at 3898.665 kb on - strand at 3898.719 kb on - strand at 3898.772 kb on + strand at 3898.775 kb on - strand at 3898.780 kb on - strand at 3898.780 kb on - strand at 3899.228 kb on + strand, within CCNA_03731 at 3899.234 kb on - strand, within CCNA_03731 at 3899.259 kb on + strand at 3899.267 kb on - strand at 3899.267 kb on - strand at 3899.267 kb on - strand at 3899.331 kb on + strand at 3899.337 kb on + strand at 3899.347 kb on + strand at 3899.397 kb on - strand at 3899.433 kb on + strand at 3899.469 kb on - strand at 3899.471 kb on + strand at 3899.479 kb on - strand at 3899.577 kb on + strand, within CCNA_03732 at 3899.586 kb on - strand, within CCNA_03732 at 3899.620 kb on - strand, within CCNA_03732 at 3899.649 kb on + strand, within CCNA_03732 at 3899.650 kb on + strand, within CCNA_03732 at 3899.720 kb on + strand, within CCNA_03732 at 3899.818 kb on + strand, within CCNA_03732 at 3899.825 kb on + strand, within CCNA_03732 at 3899.825 kb on + strand, within CCNA_03732 at 3899.833 kb on - strand, within CCNA_03732 at 3899.916 kb on - strand, within CCNA_03732 at 3900.026 kb on - strand, within CCNA_03732 at 3900.051 kb on - strand, within CCNA_03732 at 3900.149 kb on + strand, within CCNA_03732 at 3900.211 kb on + strand, within CCNA_03732 at 3900.224 kb on + strand, within CCNA_03732 at 3900.224 kb on + strand, within CCNA_03732 at 3900.318 kb on + strand, within CCNA_03732 at 3900.326 kb on - strand, within CCNA_03732 at 3900.365 kb on + strand, within CCNA_03732 at 3900.567 kb on + strand at 3900.581 kb on + strand at 3900.589 kb on - strand at 3900.589 kb on - strand at 3900.589 kb on - strand at 3900.621 kb on + strand at 3900.621 kb on + strand at 3900.621 kb on + strand at 3900.629 kb on - strand at 3900.682 kb on + strand, within CCNA_03733 at 3900.721 kb on + strand, within CCNA_03733 at 3900.747 kb on - strand, within CCNA_03733 at 3900.781 kb on + strand, within CCNA_03733 at 3900.794 kb on + strand, within CCNA_03733 at 3900.795 kb on + strand, within CCNA_03733 at 3900.810 kb on + strand, within CCNA_03733 at 3900.815 kb on + strand, within CCNA_03733 at 3900.818 kb on - strand, within CCNA_03733 at 3900.829 kb on - strand, within CCNA_03733 at 3900.837 kb on - strand, within CCNA_03733 at 3900.862 kb on - strand, within CCNA_03733 at 3900.932 kb on + strand, within CCNA_03733 at 3900.932 kb on - strand, within CCNA_03733 at 3900.940 kb on - strand, within CCNA_03733 at 3900.953 kb on + strand, within CCNA_03733 at 3901.043 kb on + strand, within CCNA_03733 at 3901.067 kb on + strand, within CCNA_03733 at 3901.170 kb on - strand, within CCNA_03733 at 3901.181 kb on + strand, within CCNA_03733 at 3901.183 kb on + strand, within CCNA_03733 at 3901.191 kb on - strand, within CCNA_03733 at 3901.207 kb on + strand, within CCNA_03733 at 3901.229 kb on + strand, within CCNA_03733 at 3901.257 kb on + strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.317 kb on - strand, within CCNA_03733 at 3901.325 kb on - strand, within CCNA_03733 at 3901.328 kb on + strand, within CCNA_03733 at 3901.352 kb on + strand, within CCNA_03733 at 3901.416 kb on - strand, within CCNA_03733 at 3901.428 kb on + strand, within CCNA_03733 at 3901.436 kb on - strand, within CCNA_03733 at 3901.487 kb on - strand, within CCNA_03733 at 3901.487 kb on - strand, within CCNA_03733 at 3901.535 kb on + strand, within CCNA_03733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,898,402 - CCNA_03730 0.60 -0.1 3,898,420 - CCNA_03730 0.62 +0.0 3,898,437 + CCNA_03730 0.64 -0.7 3,898,445 - CCNA_03730 0.65 -0.4 3,898,445 - CCNA_03730 0.65 +1.2 3,898,499 - CCNA_03730 0.71 -0.3 3,898,499 - CCNA_03730 0.71 +0.2 3,898,549 + CCNA_03730 0.77 +0.5 3,898,557 - CCNA_03730 0.78 -0.5 3,898,566 - CCNA_03730 0.79 +0.0 3,898,648 - CCNA_03730 0.88 +0.6 3,898,657 + CCNA_03730 0.89 -0.0 3,898,661 - CCNA_03730 0.90 -0.2 3,898,665 - -0.4 3,898,719 - +1.9 3,898,772 + -2.0 3,898,775 - -0.0 3,898,780 - +0.3 3,898,780 - +0.4 3,899,228 + CCNA_03731 0.88 +0.0 3,899,234 - CCNA_03731 0.89 -0.2 3,899,259 + +0.3 3,899,267 - +0.3 3,899,267 - -1.0 3,899,267 - -0.3 3,899,331 + +0.0 3,899,337 + +0.3 3,899,347 + +0.8 3,899,397 - -1.6 3,899,433 + -1.3 3,899,469 - -0.8 3,899,471 + +0.6 3,899,479 - -0.4 3,899,577 + CCNA_03732 0.16 -0.2 3,899,586 - CCNA_03732 0.17 +0.6 3,899,620 - CCNA_03732 0.20 +0.3 3,899,649 + CCNA_03732 0.22 +1.0 3,899,650 + CCNA_03732 0.22 -0.4 3,899,720 + CCNA_03732 0.28 +0.3 3,899,818 + CCNA_03732 0.37 -1.8 3,899,825 + CCNA_03732 0.37 +1.2 3,899,825 + CCNA_03732 0.37 -0.6 3,899,833 - CCNA_03732 0.38 -0.4 3,899,916 - CCNA_03732 0.45 -1.3 3,900,026 - CCNA_03732 0.55 -0.8 3,900,051 - CCNA_03732 0.57 +0.0 3,900,149 + CCNA_03732 0.65 +0.3 3,900,211 + CCNA_03732 0.71 -1.3 3,900,224 + CCNA_03732 0.72 +0.9 3,900,224 + CCNA_03732 0.72 +0.1 3,900,318 + CCNA_03732 0.80 +0.3 3,900,326 - CCNA_03732 0.80 -1.3 3,900,365 + CCNA_03732 0.84 +0.0 3,900,567 + +0.4 3,900,581 + -0.6 3,900,589 - +0.4 3,900,589 - +1.1 3,900,589 - -0.7 3,900,621 + +0.2 3,900,621 + +0.3 3,900,621 + -0.5 3,900,629 - -0.9 3,900,682 + CCNA_03733 0.11 -0.8 3,900,721 + CCNA_03733 0.14 +0.4 3,900,747 - CCNA_03733 0.16 +0.3 3,900,781 + CCNA_03733 0.19 -0.1 3,900,794 + CCNA_03733 0.20 -1.0 3,900,795 + CCNA_03733 0.20 +1.6 3,900,810 + CCNA_03733 0.21 -1.1 3,900,815 + CCNA_03733 0.21 -0.4 3,900,818 - CCNA_03733 0.22 -0.7 3,900,829 - CCNA_03733 0.22 +0.2 3,900,837 - CCNA_03733 0.23 +0.1 3,900,862 - CCNA_03733 0.25 +0.2 3,900,932 + CCNA_03733 0.30 +1.2 3,900,932 - CCNA_03733 0.30 -1.1 3,900,940 - CCNA_03733 0.31 -1.1 3,900,953 + CCNA_03733 0.32 +0.6 3,901,043 + CCNA_03733 0.39 -0.4 3,901,067 + CCNA_03733 0.41 +0.3 3,901,170 - CCNA_03733 0.48 -0.3 3,901,181 + CCNA_03733 0.49 -2.0 3,901,183 + CCNA_03733 0.49 -0.6 3,901,191 - CCNA_03733 0.50 -0.8 3,901,207 + CCNA_03733 0.51 -3.1 3,901,229 + CCNA_03733 0.53 -0.8 3,901,257 + CCNA_03733 0.55 -0.7 3,901,273 - CCNA_03733 0.56 -1.1 3,901,273 - CCNA_03733 0.56 -0.3 3,901,273 - CCNA_03733 0.56 +1.6 3,901,317 - CCNA_03733 0.60 -0.5 3,901,325 - CCNA_03733 0.60 -0.8 3,901,328 + CCNA_03733 0.60 -2.4 3,901,352 + CCNA_03733 0.62 -1.5 3,901,416 - CCNA_03733 0.67 -2.1 3,901,428 + CCNA_03733 0.68 -0.1 3,901,436 - CCNA_03733 0.69 -0.2 3,901,487 - CCNA_03733 0.73 -1.0 3,901,487 - CCNA_03733 0.73 -0.4 3,901,535 + CCNA_03733 0.76 +0.3
Or see this region's nucleotide sequence