Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03732

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03730 and CCNA_03731 overlap by 4 nucleotidesCCNA_03731 and CCNA_03732 are separated by 98 nucleotidesCCNA_03732 and CCNA_03733 overlap by 17 nucleotides CCNA_03730: CCNA_03730 - dTDP-4-dehydrorhamnose reductase, at 3,897,870 to 3,898,751 _03730 CCNA_03731: CCNA_03731 - histidinol phosphatase-family protein, at 3,898,748 to 3,899,293 _03731 CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552 _03732 CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846 _03733 Position (kb) 3899 3900 3901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3898.402 kb on - strand, within CCNA_03730at 3898.420 kb on - strand, within CCNA_03730at 3898.437 kb on + strand, within CCNA_03730at 3898.445 kb on - strand, within CCNA_03730at 3898.445 kb on - strand, within CCNA_03730at 3898.499 kb on - strand, within CCNA_03730at 3898.499 kb on - strand, within CCNA_03730at 3898.549 kb on + strand, within CCNA_03730at 3898.557 kb on - strand, within CCNA_03730at 3898.566 kb on - strand, within CCNA_03730at 3898.648 kb on - strand, within CCNA_03730at 3898.657 kb on + strand, within CCNA_03730at 3898.661 kb on - strand, within CCNA_03730at 3898.665 kb on - strandat 3898.719 kb on - strandat 3898.772 kb on + strandat 3898.775 kb on - strandat 3898.780 kb on - strandat 3898.780 kb on - strandat 3899.228 kb on + strand, within CCNA_03731at 3899.234 kb on - strand, within CCNA_03731at 3899.259 kb on + strandat 3899.267 kb on - strandat 3899.267 kb on - strandat 3899.267 kb on - strandat 3899.331 kb on + strandat 3899.337 kb on + strandat 3899.347 kb on + strandat 3899.397 kb on - strandat 3899.433 kb on + strandat 3899.469 kb on - strandat 3899.471 kb on + strandat 3899.479 kb on - strandat 3899.577 kb on + strand, within CCNA_03732at 3899.586 kb on - strand, within CCNA_03732at 3899.620 kb on - strand, within CCNA_03732at 3899.649 kb on + strand, within CCNA_03732at 3899.650 kb on + strand, within CCNA_03732at 3899.720 kb on + strand, within CCNA_03732at 3899.818 kb on + strand, within CCNA_03732at 3899.825 kb on + strand, within CCNA_03732at 3899.825 kb on + strand, within CCNA_03732at 3899.833 kb on - strand, within CCNA_03732at 3899.916 kb on - strand, within CCNA_03732at 3900.026 kb on - strand, within CCNA_03732at 3900.051 kb on - strand, within CCNA_03732at 3900.149 kb on + strand, within CCNA_03732at 3900.211 kb on + strand, within CCNA_03732at 3900.224 kb on + strand, within CCNA_03732at 3900.224 kb on + strand, within CCNA_03732at 3900.318 kb on + strand, within CCNA_03732at 3900.326 kb on - strand, within CCNA_03732at 3900.365 kb on + strand, within CCNA_03732at 3900.567 kb on + strandat 3900.581 kb on + strandat 3900.589 kb on - strandat 3900.589 kb on - strandat 3900.589 kb on - strandat 3900.621 kb on + strandat 3900.621 kb on + strandat 3900.621 kb on + strandat 3900.629 kb on - strandat 3900.682 kb on + strand, within CCNA_03733at 3900.721 kb on + strand, within CCNA_03733at 3900.747 kb on - strand, within CCNA_03733at 3900.781 kb on + strand, within CCNA_03733at 3900.794 kb on + strand, within CCNA_03733at 3900.795 kb on + strand, within CCNA_03733at 3900.810 kb on + strand, within CCNA_03733at 3900.815 kb on + strand, within CCNA_03733at 3900.818 kb on - strand, within CCNA_03733at 3900.829 kb on - strand, within CCNA_03733at 3900.837 kb on - strand, within CCNA_03733at 3900.862 kb on - strand, within CCNA_03733at 3900.932 kb on + strand, within CCNA_03733at 3900.932 kb on - strand, within CCNA_03733at 3900.940 kb on - strand, within CCNA_03733at 3900.953 kb on + strand, within CCNA_03733at 3901.043 kb on + strand, within CCNA_03733at 3901.067 kb on + strand, within CCNA_03733at 3901.170 kb on - strand, within CCNA_03733at 3901.181 kb on + strand, within CCNA_03733at 3901.183 kb on + strand, within CCNA_03733at 3901.191 kb on - strand, within CCNA_03733at 3901.207 kb on + strand, within CCNA_03733at 3901.229 kb on + strand, within CCNA_03733at 3901.257 kb on + strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.317 kb on - strand, within CCNA_03733at 3901.325 kb on - strand, within CCNA_03733at 3901.328 kb on + strand, within CCNA_03733at 3901.352 kb on + strand, within CCNA_03733at 3901.416 kb on - strand, within CCNA_03733at 3901.428 kb on + strand, within CCNA_03733at 3901.436 kb on - strand, within CCNA_03733at 3901.487 kb on - strand, within CCNA_03733at 3901.487 kb on - strand, within CCNA_03733at 3901.535 kb on + strand, within CCNA_03733

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,898,402 - CCNA_03730 0.60 -0.1
3,898,420 - CCNA_03730 0.62 +0.0
3,898,437 + CCNA_03730 0.64 -0.7
3,898,445 - CCNA_03730 0.65 -0.4
3,898,445 - CCNA_03730 0.65 +1.2
3,898,499 - CCNA_03730 0.71 -0.3
3,898,499 - CCNA_03730 0.71 +0.2
3,898,549 + CCNA_03730 0.77 +0.5
3,898,557 - CCNA_03730 0.78 -0.5
3,898,566 - CCNA_03730 0.79 +0.0
3,898,648 - CCNA_03730 0.88 +0.6
3,898,657 + CCNA_03730 0.89 -0.0
3,898,661 - CCNA_03730 0.90 -0.2
3,898,665 - -0.4
3,898,719 - +1.9
3,898,772 + -2.0
3,898,775 - -0.0
3,898,780 - +0.3
3,898,780 - +0.4
3,899,228 + CCNA_03731 0.88 +0.0
3,899,234 - CCNA_03731 0.89 -0.2
3,899,259 + +0.3
3,899,267 - +0.3
3,899,267 - -1.0
3,899,267 - -0.3
3,899,331 + +0.0
3,899,337 + +0.3
3,899,347 + +0.8
3,899,397 - -1.6
3,899,433 + -1.3
3,899,469 - -0.8
3,899,471 + +0.6
3,899,479 - -0.4
3,899,577 + CCNA_03732 0.16 -0.2
3,899,586 - CCNA_03732 0.17 +0.6
3,899,620 - CCNA_03732 0.20 +0.3
3,899,649 + CCNA_03732 0.22 +1.0
3,899,650 + CCNA_03732 0.22 -0.4
3,899,720 + CCNA_03732 0.28 +0.3
3,899,818 + CCNA_03732 0.37 -1.8
3,899,825 + CCNA_03732 0.37 +1.2
3,899,825 + CCNA_03732 0.37 -0.6
3,899,833 - CCNA_03732 0.38 -0.4
3,899,916 - CCNA_03732 0.45 -1.3
3,900,026 - CCNA_03732 0.55 -0.8
3,900,051 - CCNA_03732 0.57 +0.0
3,900,149 + CCNA_03732 0.65 +0.3
3,900,211 + CCNA_03732 0.71 -1.3
3,900,224 + CCNA_03732 0.72 +0.9
3,900,224 + CCNA_03732 0.72 +0.1
3,900,318 + CCNA_03732 0.80 +0.3
3,900,326 - CCNA_03732 0.80 -1.3
3,900,365 + CCNA_03732 0.84 +0.0
3,900,567 + +0.4
3,900,581 + -0.6
3,900,589 - +0.4
3,900,589 - +1.1
3,900,589 - -0.7
3,900,621 + +0.2
3,900,621 + +0.3
3,900,621 + -0.5
3,900,629 - -0.9
3,900,682 + CCNA_03733 0.11 -0.8
3,900,721 + CCNA_03733 0.14 +0.4
3,900,747 - CCNA_03733 0.16 +0.3
3,900,781 + CCNA_03733 0.19 -0.1
3,900,794 + CCNA_03733 0.20 -1.0
3,900,795 + CCNA_03733 0.20 +1.6
3,900,810 + CCNA_03733 0.21 -1.1
3,900,815 + CCNA_03733 0.21 -0.4
3,900,818 - CCNA_03733 0.22 -0.7
3,900,829 - CCNA_03733 0.22 +0.2
3,900,837 - CCNA_03733 0.23 +0.1
3,900,862 - CCNA_03733 0.25 +0.2
3,900,932 + CCNA_03733 0.30 +1.2
3,900,932 - CCNA_03733 0.30 -1.1
3,900,940 - CCNA_03733 0.31 -1.1
3,900,953 + CCNA_03733 0.32 +0.6
3,901,043 + CCNA_03733 0.39 -0.4
3,901,067 + CCNA_03733 0.41 +0.3
3,901,170 - CCNA_03733 0.48 -0.3
3,901,181 + CCNA_03733 0.49 -2.0
3,901,183 + CCNA_03733 0.49 -0.6
3,901,191 - CCNA_03733 0.50 -0.8
3,901,207 + CCNA_03733 0.51 -3.1
3,901,229 + CCNA_03733 0.53 -0.8
3,901,257 + CCNA_03733 0.55 -0.7
3,901,273 - CCNA_03733 0.56 -1.1
3,901,273 - CCNA_03733 0.56 -0.3
3,901,273 - CCNA_03733 0.56 +1.6
3,901,317 - CCNA_03733 0.60 -0.5
3,901,325 - CCNA_03733 0.60 -0.8
3,901,328 + CCNA_03733 0.60 -2.4
3,901,352 + CCNA_03733 0.62 -1.5
3,901,416 - CCNA_03733 0.67 -2.1
3,901,428 + CCNA_03733 0.68 -0.1
3,901,436 - CCNA_03733 0.69 -0.2
3,901,487 - CCNA_03733 0.73 -1.0
3,901,487 - CCNA_03733 0.73 -0.4
3,901,535 + CCNA_03733 0.76 +0.3

Or see this region's nucleotide sequence