Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03705

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03704 and CCNA_03705 are separated by 118 nucleotidesCCNA_03705 and CCNA_R0089 are separated by 215 nucleotidesCCNA_R0089 and CCNA_03706 are separated by 169 nucleotidesCCNA_03706 and CCNA_03707 are separated by 85 nucleotides CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636 _03704 CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225 _03705 CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516 _R0089 CCNA_03706: CCNA_03706 - small heat shock protein, at 3,874,686 to 3,875,114 _03706 CCNA_03707: CCNA_03707 - hypothetical protein, at 3,875,200 to 3,875,469 _03707 Position (kb) 3873 3874 3875Strain fitness (log2 ratio) -2 -1 0 1at 3873.317 kb on - strand, within CCNA_03704at 3873.616 kb on + strandat 3873.616 kb on + strandat 3873.624 kb on - strandat 3873.650 kb on + strandat 3873.658 kb on - strandat 3873.787 kb on - strandat 3873.851 kb on + strand, within CCNA_03705at 3873.883 kb on - strand, within CCNA_03705at 3873.951 kb on + strand, within CCNA_03705at 3874.109 kb on + strand, within CCNA_03705at 3874.117 kb on - strand, within CCNA_03705at 3874.273 kb on - strandat 3874.584 kb on - strandat 3874.584 kb on - strandat 3874.613 kb on - strandat 3874.615 kb on + strandat 3874.623 kb on - strandat 3874.623 kb on - strandat 3874.736 kb on + strand, within CCNA_03706at 3874.738 kb on + strand, within CCNA_03706at 3874.738 kb on + strand, within CCNA_03706at 3874.738 kb on + strand, within CCNA_03706at 3874.738 kb on + strand, within CCNA_03706at 3874.738 kb on + strand, within CCNA_03706at 3874.746 kb on - strand, within CCNA_03706at 3874.746 kb on - strand, within CCNA_03706at 3874.805 kb on + strand, within CCNA_03706at 3874.830 kb on + strand, within CCNA_03706at 3874.838 kb on - strand, within CCNA_03706at 3874.838 kb on - strand, within CCNA_03706at 3874.936 kb on - strand, within CCNA_03706at 3874.975 kb on + strand, within CCNA_03706at 3874.995 kb on - strand, within CCNA_03706at 3875.011 kb on - strand, within CCNA_03706at 3875.020 kb on - strand, within CCNA_03706at 3875.020 kb on - strand, within CCNA_03706at 3875.026 kb on + strand, within CCNA_03706at 3875.060 kb on - strand, within CCNA_03706at 3875.060 kb on - strand, within CCNA_03706at 3875.111 kb on + strandat 3875.119 kb on - strandat 3875.119 kb on - strandat 3875.140 kb on - strandat 3875.190 kb on - strandat 3875.190 kb on - strandat 3875.212 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
3,873,317 - CCNA_03704 0.76 -0.4
3,873,616 + +1.6
3,873,616 + +0.2
3,873,624 - +0.4
3,873,650 + +0.3
3,873,658 - -0.8
3,873,787 - -0.2
3,873,851 + CCNA_03705 0.20 +0.3
3,873,883 - CCNA_03705 0.27 +1.0
3,873,951 + CCNA_03705 0.42 -1.7
3,874,109 + CCNA_03705 0.75 -0.7
3,874,117 - CCNA_03705 0.77 -0.1
3,874,273 - -0.1
3,874,584 - -1.8
3,874,584 - -0.6
3,874,613 - +0.6
3,874,615 + -0.3
3,874,623 - -0.3
3,874,623 - +0.6
3,874,736 + CCNA_03706 0.12 +0.4
3,874,738 + CCNA_03706 0.12 -1.4
3,874,738 + CCNA_03706 0.12 +0.1
3,874,738 + CCNA_03706 0.12 -1.3
3,874,738 + CCNA_03706 0.12 +0.1
3,874,738 + CCNA_03706 0.12 +0.0
3,874,746 - CCNA_03706 0.14 -0.6
3,874,746 - CCNA_03706 0.14 -0.2
3,874,805 + CCNA_03706 0.28 -0.1
3,874,830 + CCNA_03706 0.34 +0.2
3,874,838 - CCNA_03706 0.35 -0.6
3,874,838 - CCNA_03706 0.35 -1.0
3,874,936 - CCNA_03706 0.58 -0.6
3,874,975 + CCNA_03706 0.67 -0.1
3,874,995 - CCNA_03706 0.72 +0.5
3,875,011 - CCNA_03706 0.76 -0.2
3,875,020 - CCNA_03706 0.78 -0.3
3,875,020 - CCNA_03706 0.78 -1.1
3,875,026 + CCNA_03706 0.79 +0.3
3,875,060 - CCNA_03706 0.87 -1.8
3,875,060 - CCNA_03706 0.87 -0.3
3,875,111 + -0.1
3,875,119 - -0.1
3,875,119 - +1.2
3,875,140 - +0.4
3,875,190 - +0.0
3,875,190 - +0.4
3,875,212 + +0.4

Or see this region's nucleotide sequence