Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03700 and CCNA_03701 are separated by 81 nucleotides CCNA_03701 and CCNA_03702 are separated by 202 nucleotides CCNA_03702 and CCNA_03703 are separated by 148 nucleotides CCNA_03703 and CCNA_03704 are separated by 114 nucleotides
CCNA_03700: CCNA_03700 - large-conductance mechanosensitive channel, at 3,868,697 to 3,869,116
_03700
CCNA_03701: CCNA_03701 - integration host factor beta-subunit, at 3,869,198 to 3,869,488
_03701
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190
_03703
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
Position (kb)
3869
3870
3871
3872 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3868.703 kb on - strand at 3868.814 kb on - strand, within CCNA_03700 at 3868.876 kb on - strand, within CCNA_03700 at 3868.946 kb on - strand, within CCNA_03700 at 3869.011 kb on + strand, within CCNA_03700 at 3869.015 kb on + strand, within CCNA_03700 at 3869.109 kb on + strand at 3869.135 kb on + strand at 3869.135 kb on + strand at 3869.136 kb on - strand at 3869.136 kb on - strand at 3869.136 kb on - strand at 3869.143 kb on - strand at 3869.168 kb on - strand at 3869.382 kb on - strand, within CCNA_03701 at 3869.503 kb on - strand at 3869.533 kb on + strand at 3869.564 kb on - strand at 3869.615 kb on - strand at 3869.657 kb on - strand at 3869.697 kb on - strand at 3869.704 kb on - strand at 3869.900 kb on + strand, within CCNA_03702 at 3870.236 kb on + strand, within CCNA_03702 at 3870.329 kb on + strand, within CCNA_03702 at 3870.337 kb on - strand, within CCNA_03702 at 3872.186 kb on + strand at 3872.186 kb on + strand at 3872.217 kb on - strand at 3872.225 kb on + strand at 3872.226 kb on + strand at 3872.231 kb on + strand at 3872.233 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.239 kb on - strand at 3872.239 kb on - strand at 3872.253 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.289 kb on - strand at 3872.301 kb on - strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.311 kb on - strand at 3872.317 kb on - strand at 3872.319 kb on + strand at 3872.325 kb on + strand at 3872.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,868,703 - +0.6 3,868,814 - CCNA_03700 0.28 -0.6 3,868,876 - CCNA_03700 0.43 -0.4 3,868,946 - CCNA_03700 0.59 -0.6 3,869,011 + CCNA_03700 0.75 +0.4 3,869,015 + CCNA_03700 0.76 +0.4 3,869,109 + +1.1 3,869,135 + +0.7 3,869,135 + +1.9 3,869,136 - +0.0 3,869,136 - +1.1 3,869,136 - +0.5 3,869,143 - +0.2 3,869,168 - +0.3 3,869,382 - CCNA_03701 0.63 -0.6 3,869,503 - +0.1 3,869,533 + +0.6 3,869,564 - -0.2 3,869,615 - +0.4 3,869,657 - -0.1 3,869,697 - -0.8 3,869,704 - +0.0 3,869,900 + CCNA_03702 0.12 -0.2 3,870,236 + CCNA_03702 0.32 +0.0 3,870,329 + CCNA_03702 0.37 -1.6 3,870,337 - CCNA_03702 0.38 -0.8 3,872,186 + +0.2 3,872,186 + +0.4 3,872,217 - -0.1 3,872,225 + +0.7 3,872,226 + +0.6 3,872,231 + +0.8 3,872,233 - +0.7 3,872,234 - +0.4 3,872,234 - +0.2 3,872,234 - +0.6 3,872,239 - -1.0 3,872,239 - -1.5 3,872,253 - +0.1 3,872,273 - -0.5 3,872,273 - -0.3 3,872,273 - +0.2 3,872,281 + +0.3 3,872,281 + -0.2 3,872,281 + -0.5 3,872,289 - +0.6 3,872,301 - +0.5 3,872,303 + -0.5 3,872,303 + -0.1 3,872,303 + +0.4 3,872,303 + +0.3 3,872,311 - +0.6 3,872,317 - +0.8 3,872,319 + -1.8 3,872,325 + -0.4 3,872,346 - +0.1
Or see this region's nucleotide sequence