Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03655 and CCNA_03656 are separated by 9 nucleotides CCNA_03656 and CCNA_03657 are separated by 12 nucleotides CCNA_03657 and CCNA_03658 are separated by 12 nucleotides
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418
_03656
CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258
_03657
CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491
_03658
Position (kb)
3818
3819
3820 Strain fitness (log2 ratio)
-2
-1
0
1 at 3817.436 kb on + strand at 3817.436 kb on + strand at 3817.444 kb on - strand at 3817.444 kb on - strand at 3817.471 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.493 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3818.430 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.598 kb on + strand, within CCNA_03657 at 3818.790 kb on - strand, within CCNA_03657 at 3818.790 kb on - strand, within CCNA_03657 at 3818.937 kb on - strand, within CCNA_03657 at 3819.073 kb on - strand, within CCNA_03657 at 3819.108 kb on - strand, within CCNA_03657 at 3819.145 kb on - strand, within CCNA_03657 at 3819.145 kb on - strand, within CCNA_03657 at 3819.215 kb on + strand at 3819.276 kb on - strand at 3819.308 kb on - strand at 3819.361 kb on - strand at 3819.363 kb on + strand at 3819.394 kb on + strand, within CCNA_03658 at 3819.440 kb on - strand, within CCNA_03658 at 3819.452 kb on - strand, within CCNA_03658 at 3819.452 kb on - strand, within CCNA_03658 at 3819.454 kb on + strand, within CCNA_03658 at 3819.460 kb on - strand, within CCNA_03658 at 3819.522 kb on - strand, within CCNA_03658 at 3819.549 kb on - strand, within CCNA_03658 at 3819.905 kb on - strand, within CCNA_03658 at 3820.025 kb on + strand, within CCNA_03658 at 3820.062 kb on - strand, within CCNA_03658 at 3820.064 kb on + strand, within CCNA_03658 at 3820.077 kb on - strand, within CCNA_03658 at 3820.082 kb on - strand, within CCNA_03658 at 3820.082 kb on - strand, within CCNA_03658 at 3820.124 kb on - strand, within CCNA_03658 at 3820.129 kb on - strand, within CCNA_03658 at 3820.146 kb on - strand, within CCNA_03658
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,817,436 + -0.5 3,817,436 + +1.2 3,817,444 - -0.3 3,817,444 - +0.0 3,817,471 + -1.0 3,817,492 + -0.4 3,817,492 + -0.0 3,817,492 + -0.8 3,817,493 - +0.1 3,817,500 - +0.9 3,817,500 - +0.1 3,818,430 - +0.1 3,818,470 - +0.5 3,818,470 - -0.9 3,818,470 - -0.6 3,818,470 - +0.6 3,818,470 - -0.3 3,818,470 - +0.1 3,818,470 - -0.9 3,818,470 - +0.3 3,818,470 - +0.0 3,818,470 - +0.3 3,818,470 - -1.5 3,818,470 - -0.1 3,818,470 - +0.5 3,818,470 - +0.2 3,818,470 - -1.1 3,818,470 - +1.0 3,818,470 - +0.3 3,818,598 + CCNA_03657 0.20 -0.1 3,818,790 - CCNA_03657 0.43 -1.5 3,818,790 - CCNA_03657 0.43 -2.2 3,818,937 - CCNA_03657 0.61 +0.2 3,819,073 - CCNA_03657 0.78 -0.9 3,819,108 - CCNA_03657 0.82 -1.5 3,819,145 - CCNA_03657 0.86 +0.2 3,819,145 - CCNA_03657 0.86 -1.8 3,819,215 + +0.6 3,819,276 - -0.2 3,819,308 - +0.8 3,819,361 - +0.3 3,819,363 + +0.2 3,819,394 + CCNA_03658 0.10 +0.6 3,819,440 - CCNA_03658 0.14 -0.1 3,819,452 - CCNA_03658 0.15 -0.4 3,819,452 - CCNA_03658 0.15 -0.0 3,819,454 + CCNA_03658 0.15 -0.4 3,819,460 - CCNA_03658 0.15 -0.5 3,819,522 - CCNA_03658 0.21 +0.4 3,819,549 - CCNA_03658 0.23 -1.1 3,819,905 - CCNA_03658 0.52 -1.5 3,820,025 + CCNA_03658 0.62 +1.6 3,820,062 - CCNA_03658 0.65 -2.4 3,820,064 + CCNA_03658 0.65 -0.2 3,820,077 - CCNA_03658 0.66 +0.5 3,820,082 - CCNA_03658 0.66 -0.3 3,820,082 - CCNA_03658 0.66 -1.2 3,820,124 - CCNA_03658 0.70 +0.3 3,820,129 - CCNA_03658 0.70 -0.8 3,820,146 - CCNA_03658 0.72 -0.1
Or see this region's nucleotide sequence