Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03657

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03655 and CCNA_03656 are separated by 9 nucleotidesCCNA_03656 and CCNA_03657 are separated by 12 nucleotidesCCNA_03657 and CCNA_03658 are separated by 12 nucleotides CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418 _03656 CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258 _03657 CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491 _03658 Position (kb) 3818 3819 3820Strain fitness (log2 ratio) -2 -1 0 1at 3817.436 kb on + strandat 3817.436 kb on + strandat 3817.444 kb on - strandat 3817.444 kb on - strandat 3817.471 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.493 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3818.430 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.598 kb on + strand, within CCNA_03657at 3818.790 kb on - strand, within CCNA_03657at 3818.790 kb on - strand, within CCNA_03657at 3818.937 kb on - strand, within CCNA_03657at 3819.073 kb on - strand, within CCNA_03657at 3819.108 kb on - strand, within CCNA_03657at 3819.145 kb on - strand, within CCNA_03657at 3819.145 kb on - strand, within CCNA_03657at 3819.215 kb on + strandat 3819.276 kb on - strandat 3819.308 kb on - strandat 3819.361 kb on - strandat 3819.363 kb on + strandat 3819.394 kb on + strand, within CCNA_03658at 3819.440 kb on - strand, within CCNA_03658at 3819.452 kb on - strand, within CCNA_03658at 3819.452 kb on - strand, within CCNA_03658at 3819.454 kb on + strand, within CCNA_03658at 3819.460 kb on - strand, within CCNA_03658at 3819.522 kb on - strand, within CCNA_03658at 3819.549 kb on - strand, within CCNA_03658at 3819.905 kb on - strand, within CCNA_03658at 3820.025 kb on + strand, within CCNA_03658at 3820.062 kb on - strand, within CCNA_03658at 3820.064 kb on + strand, within CCNA_03658at 3820.077 kb on - strand, within CCNA_03658at 3820.082 kb on - strand, within CCNA_03658at 3820.082 kb on - strand, within CCNA_03658at 3820.124 kb on - strand, within CCNA_03658at 3820.129 kb on - strand, within CCNA_03658at 3820.146 kb on - strand, within CCNA_03658

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,817,436 + -0.5
3,817,436 + +1.2
3,817,444 - -0.3
3,817,444 - +0.0
3,817,471 + -1.0
3,817,492 + -0.4
3,817,492 + -0.0
3,817,492 + -0.8
3,817,493 - +0.1
3,817,500 - +0.9
3,817,500 - +0.1
3,818,430 - +0.1
3,818,470 - +0.5
3,818,470 - -0.9
3,818,470 - -0.6
3,818,470 - +0.6
3,818,470 - -0.3
3,818,470 - +0.1
3,818,470 - -0.9
3,818,470 - +0.3
3,818,470 - +0.0
3,818,470 - +0.3
3,818,470 - -1.5
3,818,470 - -0.1
3,818,470 - +0.5
3,818,470 - +0.2
3,818,470 - -1.1
3,818,470 - +1.0
3,818,470 - +0.3
3,818,598 + CCNA_03657 0.20 -0.1
3,818,790 - CCNA_03657 0.43 -1.5
3,818,790 - CCNA_03657 0.43 -2.2
3,818,937 - CCNA_03657 0.61 +0.2
3,819,073 - CCNA_03657 0.78 -0.9
3,819,108 - CCNA_03657 0.82 -1.5
3,819,145 - CCNA_03657 0.86 +0.2
3,819,145 - CCNA_03657 0.86 -1.8
3,819,215 + +0.6
3,819,276 - -0.2
3,819,308 - +0.8
3,819,361 - +0.3
3,819,363 + +0.2
3,819,394 + CCNA_03658 0.10 +0.6
3,819,440 - CCNA_03658 0.14 -0.1
3,819,452 - CCNA_03658 0.15 -0.4
3,819,452 - CCNA_03658 0.15 -0.0
3,819,454 + CCNA_03658 0.15 -0.4
3,819,460 - CCNA_03658 0.15 -0.5
3,819,522 - CCNA_03658 0.21 +0.4
3,819,549 - CCNA_03658 0.23 -1.1
3,819,905 - CCNA_03658 0.52 -1.5
3,820,025 + CCNA_03658 0.62 +1.6
3,820,062 - CCNA_03658 0.65 -2.4
3,820,064 + CCNA_03658 0.65 -0.2
3,820,077 - CCNA_03658 0.66 +0.5
3,820,082 - CCNA_03658 0.66 -0.3
3,820,082 - CCNA_03658 0.66 -1.2
3,820,124 - CCNA_03658 0.70 +0.3
3,820,129 - CCNA_03658 0.70 -0.8
3,820,146 - CCNA_03658 0.72 -0.1

Or see this region's nucleotide sequence