Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03652

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03651 and CCNA_03652 are separated by 130 nucleotidesCCNA_03652 and CCNA_03653 are separated by 123 nucleotidesCCNA_03653 and CCNA_03910 are separated by 212 nucleotidesCCNA_03910 and CCNA_03655 are separated by 85 nucleotides CCNA_03651: CCNA_03651 - ATP-dependent nuclease subunit B, at 3,808,728 to 3,811,718 _03651 CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310 _03652 CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766 _03653 CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086 _03910 CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 Position (kb) 3811 3812 3813 3814 3815 3816Strain fitness (log2 ratio) -2 -1 0 1 2at 3811.040 kb on + strand, within CCNA_03651at 3811.101 kb on + strand, within CCNA_03651at 3811.209 kb on - strand, within CCNA_03651at 3811.267 kb on + strand, within CCNA_03651at 3811.310 kb on + strand, within CCNA_03651at 3811.343 kb on - strand, within CCNA_03651at 3811.458 kb on + strandat 3811.503 kb on + strandat 3811.717 kb on - strandat 3811.758 kb on - strandat 3811.821 kb on - strandat 3811.891 kb on + strandat 3811.997 kb on + strandat 3812.176 kb on - strandat 3812.539 kb on - strand, within CCNA_03652at 3812.712 kb on - strand, within CCNA_03652at 3812.805 kb on + strand, within CCNA_03652at 3812.884 kb on + strand, within CCNA_03652at 3813.316 kb on + strand, within CCNA_03652at 3813.391 kb on - strand, within CCNA_03652at 3813.391 kb on - strand, within CCNA_03652at 3813.462 kb on + strand, within CCNA_03652at 3813.532 kb on - strand, within CCNA_03652at 3813.534 kb on + strand, within CCNA_03652at 3813.694 kb on - strand, within CCNA_03652at 3813.730 kb on + strand, within CCNA_03652at 3813.911 kb on + strand, within CCNA_03652at 3813.949 kb on + strand, within CCNA_03652at 3813.957 kb on - strand, within CCNA_03652at 3814.015 kb on + strand, within CCNA_03652at 3814.023 kb on - strand, within CCNA_03652at 3814.683 kb on + strand, within CCNA_03652at 3814.695 kb on + strand, within CCNA_03652at 3814.774 kb on + strand, within CCNA_03652at 3814.774 kb on + strand, within CCNA_03652at 3814.798 kb on + strand, within CCNA_03652at 3814.911 kb on + strand, within CCNA_03652at 3814.991 kb on - strandat 3814.996 kb on - strandat 3815.011 kb on + strandat 3815.027 kb on + strandat 3815.032 kb on + strandat 3815.052 kb on - strandat 3815.181 kb on + strandat 3815.196 kb on - strandat 3815.249 kb on + strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.305 kb on + strandat 3815.312 kb on - strandat 3815.313 kb on - strandat 3815.336 kb on + strandat 3815.344 kb on - strandat 3815.363 kb on - strandat 3815.422 kb on - strandat 3815.819 kb on - strandat 3815.868 kb on - strandat 3815.873 kb on - strandat 3815.923 kb on + strandat 3815.923 kb on + strandat 3815.924 kb on - strandat 3815.931 kb on - strandat 3815.936 kb on - strandat 3815.975 kb on + strandat 3816.069 kb on + strand, within CCNA_03910at 3816.070 kb on + strand, within CCNA_03910at 3816.076 kb on + strandat 3816.084 kb on - strandat 3816.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,811,040 + CCNA_03651 0.77 -0.1
3,811,101 + CCNA_03651 0.79 +0.3
3,811,209 - CCNA_03651 0.83 +0.6
3,811,267 + CCNA_03651 0.85 -1.3
3,811,310 + CCNA_03651 0.86 -1.2
3,811,343 - CCNA_03651 0.87 -0.2
3,811,458 + -0.2
3,811,503 + +1.0
3,811,717 - +0.6
3,811,758 - +0.0
3,811,821 - +0.3
3,811,891 + -0.8
3,811,997 + +1.9
3,812,176 - +0.6
3,812,539 - CCNA_03652 0.20 -1.0
3,812,712 - CCNA_03652 0.25 +1.0
3,812,805 + CCNA_03652 0.28 -0.2
3,812,884 + CCNA_03652 0.30 -0.2
3,813,316 + CCNA_03652 0.42 +0.0
3,813,391 - CCNA_03652 0.45 -0.2
3,813,391 - CCNA_03652 0.45 -2.2
3,813,462 + CCNA_03652 0.47 -1.0
3,813,532 - CCNA_03652 0.49 +0.6
3,813,534 + CCNA_03652 0.49 +0.3
3,813,694 - CCNA_03652 0.53 +0.3
3,813,730 + CCNA_03652 0.54 -0.2
3,813,911 + CCNA_03652 0.60 -0.7
3,813,949 + CCNA_03652 0.61 -0.4
3,813,957 - CCNA_03652 0.61 -1.1
3,814,015 + CCNA_03652 0.63 -0.2
3,814,023 - CCNA_03652 0.63 +0.0
3,814,683 + CCNA_03652 0.82 -0.3
3,814,695 + CCNA_03652 0.82 -0.8
3,814,774 + CCNA_03652 0.84 +0.0
3,814,774 + CCNA_03652 0.84 -0.6
3,814,798 + CCNA_03652 0.85 -1.4
3,814,911 + CCNA_03652 0.88 -1.0
3,814,991 - -0.7
3,814,996 - -0.4
3,815,011 + +1.0
3,815,027 + -1.8
3,815,032 + -1.5
3,815,052 - -1.4
3,815,181 + -1.5
3,815,196 - -0.9
3,815,249 + +0.5
3,815,257 - -0.2
3,815,257 - -1.5
3,815,257 - -0.4
3,815,305 + +0.3
3,815,312 - -0.1
3,815,313 - +0.3
3,815,336 + +0.0
3,815,344 - -0.2
3,815,363 - +0.3
3,815,422 - +0.0
3,815,819 - -0.3
3,815,868 - +0.3
3,815,873 - -0.1
3,815,923 + -2.5
3,815,923 + +0.1
3,815,924 - +0.1
3,815,931 - -0.1
3,815,936 - -0.9
3,815,975 + +0.4
3,816,069 + CCNA_03910 0.83 +0.4
3,816,070 + CCNA_03910 0.84 -0.7
3,816,076 + -0.4
3,816,084 - +0.0
3,816,100 - +1.2

Or see this region's nucleotide sequence