Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03649 and CCNA_03650 overlap by 4 nucleotides CCNA_03650 and CCNA_03651 overlap by 4 nucleotides CCNA_03651 and CCNA_03652 are separated by 130 nucleotides
CCNA_03649: CCNA_03649 - Ser/Thr kinase-related phosphotransferase, at 3,806,915 to 3,808,006
_03649
CCNA_03650: CCNA_03650 - mannose-1-phosphate guanyltransferase, at 3,808,003 to 3,808,731
_03650
CCNA_03651: CCNA_03651 - ATP-dependent nuclease subunit B, at 3,808,728 to 3,811,718
_03651
CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310
_03652
Position (kb)
3808
3809
3810
3811
3812 Strain fitness (log2 ratio)
-1
0
1
2 at 3807.744 kb on - strand, within CCNA_03649 at 3807.770 kb on - strand, within CCNA_03649 at 3807.774 kb on + strand, within CCNA_03649 at 3807.779 kb on + strand, within CCNA_03649 at 3807.810 kb on + strand, within CCNA_03649 at 3807.815 kb on - strand, within CCNA_03649 at 3807.886 kb on + strand, within CCNA_03649 at 3807.886 kb on + strand, within CCNA_03649 at 3807.890 kb on - strand, within CCNA_03649 at 3807.910 kb on + strand at 3807.918 kb on - strand at 3807.918 kb on - strand at 3807.929 kb on - strand at 3807.929 kb on - strand at 3807.950 kb on - strand at 3807.950 kb on - strand at 3808.080 kb on + strand, within CCNA_03650 at 3808.080 kb on + strand, within CCNA_03650 at 3808.110 kb on + strand, within CCNA_03650 at 3808.119 kb on - strand, within CCNA_03650 at 3808.181 kb on - strand, within CCNA_03650 at 3808.194 kb on + strand, within CCNA_03650 at 3808.321 kb on + strand, within CCNA_03650 at 3808.385 kb on - strand, within CCNA_03650 at 3808.434 kb on + strand, within CCNA_03650 at 3808.437 kb on - strand, within CCNA_03650 at 3808.485 kb on - strand, within CCNA_03650 at 3808.730 kb on + strand at 3809.226 kb on + strand, within CCNA_03651 at 3809.712 kb on - strand, within CCNA_03651 at 3809.986 kb on + strand, within CCNA_03651 at 3810.195 kb on + strand, within CCNA_03651 at 3810.500 kb on - strand, within CCNA_03651 at 3810.500 kb on - strand, within CCNA_03651 at 3810.603 kb on - strand, within CCNA_03651 at 3810.680 kb on + strand, within CCNA_03651 at 3811.040 kb on + strand, within CCNA_03651 at 3811.101 kb on + strand, within CCNA_03651 at 3811.209 kb on - strand, within CCNA_03651 at 3811.267 kb on + strand, within CCNA_03651 at 3811.310 kb on + strand, within CCNA_03651 at 3811.343 kb on - strand, within CCNA_03651 at 3811.458 kb on + strand at 3811.503 kb on + strand at 3811.717 kb on - strand at 3811.758 kb on - strand at 3811.821 kb on - strand at 3811.891 kb on + strand at 3811.997 kb on + strand at 3812.176 kb on - strand at 3812.539 kb on - strand, within CCNA_03652 at 3812.712 kb on - strand, within CCNA_03652
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,807,744 - CCNA_03649 0.76 -0.8 3,807,770 - CCNA_03649 0.78 -1.3 3,807,774 + CCNA_03649 0.79 -1.0 3,807,779 + CCNA_03649 0.79 +1.3 3,807,810 + CCNA_03649 0.82 +0.2 3,807,815 - CCNA_03649 0.82 +0.1 3,807,886 + CCNA_03649 0.89 +0.4 3,807,886 + CCNA_03649 0.89 -1.2 3,807,890 - CCNA_03649 0.89 -0.8 3,807,910 + -0.1 3,807,918 - -0.4 3,807,918 - -0.3 3,807,929 - -0.0 3,807,929 - -0.4 3,807,950 - -0.4 3,807,950 - +1.8 3,808,080 + CCNA_03650 0.11 -0.7 3,808,080 + CCNA_03650 0.11 -0.4 3,808,110 + CCNA_03650 0.15 -1.1 3,808,119 - CCNA_03650 0.16 -0.5 3,808,181 - CCNA_03650 0.24 +0.3 3,808,194 + CCNA_03650 0.26 -0.2 3,808,321 + CCNA_03650 0.44 +0.1 3,808,385 - CCNA_03650 0.52 +0.3 3,808,434 + CCNA_03650 0.59 +0.6 3,808,437 - CCNA_03650 0.60 +0.1 3,808,485 - CCNA_03650 0.66 +0.1 3,808,730 + +0.1 3,809,226 + CCNA_03651 0.17 -0.7 3,809,712 - CCNA_03651 0.33 -0.8 3,809,986 + CCNA_03651 0.42 -0.0 3,810,195 + CCNA_03651 0.49 -1.1 3,810,500 - CCNA_03651 0.59 +0.0 3,810,500 - CCNA_03651 0.59 +1.6 3,810,603 - CCNA_03651 0.63 -1.2 3,810,680 + CCNA_03651 0.65 -1.7 3,811,040 + CCNA_03651 0.77 -0.1 3,811,101 + CCNA_03651 0.79 +0.3 3,811,209 - CCNA_03651 0.83 +0.6 3,811,267 + CCNA_03651 0.85 -1.3 3,811,310 + CCNA_03651 0.86 -1.2 3,811,343 - CCNA_03651 0.87 -0.2 3,811,458 + -0.2 3,811,503 + +1.0 3,811,717 - +0.6 3,811,758 - +0.0 3,811,821 - +0.3 3,811,891 + -0.8 3,811,997 + +1.9 3,812,176 - +0.6 3,812,539 - CCNA_03652 0.20 -1.0 3,812,712 - CCNA_03652 0.25 +1.0
Or see this region's nucleotide sequence