Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03651

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03649 and CCNA_03650 overlap by 4 nucleotidesCCNA_03650 and CCNA_03651 overlap by 4 nucleotidesCCNA_03651 and CCNA_03652 are separated by 130 nucleotides CCNA_03649: CCNA_03649 - Ser/Thr kinase-related phosphotransferase, at 3,806,915 to 3,808,006 _03649 CCNA_03650: CCNA_03650 - mannose-1-phosphate guanyltransferase, at 3,808,003 to 3,808,731 _03650 CCNA_03651: CCNA_03651 - ATP-dependent nuclease subunit B, at 3,808,728 to 3,811,718 _03651 CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310 _03652 Position (kb) 3808 3809 3810 3811 3812Strain fitness (log2 ratio) -1 0 1 2at 3807.744 kb on - strand, within CCNA_03649at 3807.770 kb on - strand, within CCNA_03649at 3807.774 kb on + strand, within CCNA_03649at 3807.779 kb on + strand, within CCNA_03649at 3807.810 kb on + strand, within CCNA_03649at 3807.815 kb on - strand, within CCNA_03649at 3807.886 kb on + strand, within CCNA_03649at 3807.886 kb on + strand, within CCNA_03649at 3807.890 kb on - strand, within CCNA_03649at 3807.910 kb on + strandat 3807.918 kb on - strandat 3807.918 kb on - strandat 3807.929 kb on - strandat 3807.929 kb on - strandat 3807.950 kb on - strandat 3807.950 kb on - strandat 3808.080 kb on + strand, within CCNA_03650at 3808.080 kb on + strand, within CCNA_03650at 3808.110 kb on + strand, within CCNA_03650at 3808.119 kb on - strand, within CCNA_03650at 3808.181 kb on - strand, within CCNA_03650at 3808.194 kb on + strand, within CCNA_03650at 3808.321 kb on + strand, within CCNA_03650at 3808.385 kb on - strand, within CCNA_03650at 3808.434 kb on + strand, within CCNA_03650at 3808.437 kb on - strand, within CCNA_03650at 3808.485 kb on - strand, within CCNA_03650at 3808.730 kb on + strandat 3809.226 kb on + strand, within CCNA_03651at 3809.712 kb on - strand, within CCNA_03651at 3809.986 kb on + strand, within CCNA_03651at 3810.195 kb on + strand, within CCNA_03651at 3810.500 kb on - strand, within CCNA_03651at 3810.500 kb on - strand, within CCNA_03651at 3810.603 kb on - strand, within CCNA_03651at 3810.680 kb on + strand, within CCNA_03651at 3811.040 kb on + strand, within CCNA_03651at 3811.101 kb on + strand, within CCNA_03651at 3811.209 kb on - strand, within CCNA_03651at 3811.267 kb on + strand, within CCNA_03651at 3811.310 kb on + strand, within CCNA_03651at 3811.343 kb on - strand, within CCNA_03651at 3811.458 kb on + strandat 3811.503 kb on + strandat 3811.717 kb on - strandat 3811.758 kb on - strandat 3811.821 kb on - strandat 3811.891 kb on + strandat 3811.997 kb on + strandat 3812.176 kb on - strandat 3812.539 kb on - strand, within CCNA_03652at 3812.712 kb on - strand, within CCNA_03652

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
3,807,744 - CCNA_03649 0.76 -0.8
3,807,770 - CCNA_03649 0.78 -1.3
3,807,774 + CCNA_03649 0.79 -1.0
3,807,779 + CCNA_03649 0.79 +1.3
3,807,810 + CCNA_03649 0.82 +0.2
3,807,815 - CCNA_03649 0.82 +0.1
3,807,886 + CCNA_03649 0.89 +0.4
3,807,886 + CCNA_03649 0.89 -1.2
3,807,890 - CCNA_03649 0.89 -0.8
3,807,910 + -0.1
3,807,918 - -0.4
3,807,918 - -0.3
3,807,929 - -0.0
3,807,929 - -0.4
3,807,950 - -0.4
3,807,950 - +1.8
3,808,080 + CCNA_03650 0.11 -0.7
3,808,080 + CCNA_03650 0.11 -0.4
3,808,110 + CCNA_03650 0.15 -1.1
3,808,119 - CCNA_03650 0.16 -0.5
3,808,181 - CCNA_03650 0.24 +0.3
3,808,194 + CCNA_03650 0.26 -0.2
3,808,321 + CCNA_03650 0.44 +0.1
3,808,385 - CCNA_03650 0.52 +0.3
3,808,434 + CCNA_03650 0.59 +0.6
3,808,437 - CCNA_03650 0.60 +0.1
3,808,485 - CCNA_03650 0.66 +0.1
3,808,730 + +0.1
3,809,226 + CCNA_03651 0.17 -0.7
3,809,712 - CCNA_03651 0.33 -0.8
3,809,986 + CCNA_03651 0.42 -0.0
3,810,195 + CCNA_03651 0.49 -1.1
3,810,500 - CCNA_03651 0.59 +0.0
3,810,500 - CCNA_03651 0.59 +1.6
3,810,603 - CCNA_03651 0.63 -1.2
3,810,680 + CCNA_03651 0.65 -1.7
3,811,040 + CCNA_03651 0.77 -0.1
3,811,101 + CCNA_03651 0.79 +0.3
3,811,209 - CCNA_03651 0.83 +0.6
3,811,267 + CCNA_03651 0.85 -1.3
3,811,310 + CCNA_03651 0.86 -1.2
3,811,343 - CCNA_03651 0.87 -0.2
3,811,458 + -0.2
3,811,503 + +1.0
3,811,717 - +0.6
3,811,758 - +0.0
3,811,821 - +0.3
3,811,891 + -0.8
3,811,997 + +1.9
3,812,176 - +0.6
3,812,539 - CCNA_03652 0.20 -1.0
3,812,712 - CCNA_03652 0.25 +1.0

Or see this region's nucleotide sequence