Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03555 and CCNA_03556 are separated by 9 nucleotides CCNA_03556 and CCNA_03557 are separated by 109 nucleotides CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides
CCNA_03555: CCNA_03555 - esterase lipase family protein, at 3,711,896 to 3,712,645
_03555
CCNA_03556: CCNA_03556 - multidrug efflux system protein, at 3,712,655 to 3,712,975
_03556
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
Position (kb) 3713
3714 Strain fitness (log2 ratio) -1
0
1 at 3712.141 kb on + strand, within CCNA_03555 at 3712.218 kb on + strand, within CCNA_03555 at 3712.218 kb on + strand, within CCNA_03555 at 3712.222 kb on + strand, within CCNA_03555 at 3712.284 kb on - strand, within CCNA_03555 at 3712.288 kb on + strand, within CCNA_03555 at 3712.291 kb on + strand, within CCNA_03555 at 3712.298 kb on + strand, within CCNA_03555 at 3712.314 kb on - strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.534 kb on + strand, within CCNA_03555 at 3712.535 kb on + strand, within CCNA_03555 at 3712.584 kb on + strand at 3712.622 kb on + strand at 3712.652 kb on + strand at 3712.665 kb on - strand at 3712.702 kb on + strand, within CCNA_03556 at 3712.705 kb on - strand, within CCNA_03556 at 3712.788 kb on + strand, within CCNA_03556 at 3712.791 kb on - strand, within CCNA_03556 at 3712.795 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.920 kb on - strand, within CCNA_03556 at 3712.921 kb on - strand, within CCNA_03556 at 3713.083 kb on - strand at 3713.103 kb on + strand at 3713.174 kb on - strand, within CCNA_03557 at 3713.201 kb on - strand, within CCNA_03557 at 3713.252 kb on - strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.326 kb on - strand, within CCNA_03557 at 3713.330 kb on + strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.381 kb on + strand, within CCNA_03557 at 3713.418 kb on - strand, within CCNA_03557 at 3713.524 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.701 kb on + strand, within CCNA_03557 at 3713.706 kb on + strand, within CCNA_03557 at 3713.869 kb on - strand at 3713.881 kb on + strand at 3713.991 kb on - strand at 3713.991 kb on - strand at 3714.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,712,141 + CCNA_03555 0.33 +0.3 3,712,218 + CCNA_03555 0.43 +0.5 3,712,218 + CCNA_03555 0.43 +0.2 3,712,222 + CCNA_03555 0.43 -0.5 3,712,284 - CCNA_03555 0.52 +0.1 3,712,288 + CCNA_03555 0.52 +0.0 3,712,291 + CCNA_03555 0.53 +0.9 3,712,298 + CCNA_03555 0.54 +0.2 3,712,314 - CCNA_03555 0.56 +0.3 3,712,457 - CCNA_03555 0.75 +0.2 3,712,457 - CCNA_03555 0.75 +0.4 3,712,534 + CCNA_03555 0.85 +0.3 3,712,535 + CCNA_03555 0.85 -0.2 3,712,584 + +0.1 3,712,622 + +1.0 3,712,652 + +0.1 3,712,665 - +0.1 3,712,702 + CCNA_03556 0.15 +0.6 3,712,705 - CCNA_03556 0.16 +0.5 3,712,788 + CCNA_03556 0.41 -0.9 3,712,791 - CCNA_03556 0.42 +0.5 3,712,795 + CCNA_03556 0.44 -0.1 3,712,913 + CCNA_03556 0.80 -0.2 3,712,913 + CCNA_03556 0.80 +0.4 3,712,920 - CCNA_03556 0.83 +0.4 3,712,921 - CCNA_03556 0.83 -0.2 3,713,083 - +0.3 3,713,103 + +0.2 3,713,174 - CCNA_03557 0.12 +0.2 3,713,201 - CCNA_03557 0.16 +1.4 3,713,252 - CCNA_03557 0.23 +0.3 3,713,316 - CCNA_03557 0.32 +0.4 3,713,316 - CCNA_03557 0.32 -0.1 3,713,326 - CCNA_03557 0.33 -0.2 3,713,330 + CCNA_03557 0.34 +1.0 3,713,338 - CCNA_03557 0.35 +0.1 3,713,338 - CCNA_03557 0.35 -0.6 3,713,381 + CCNA_03557 0.41 -0.1 3,713,418 - CCNA_03557 0.46 +0.2 3,713,524 - CCNA_03557 0.60 +0.7 3,713,547 - CCNA_03557 0.64 +0.2 3,713,547 - CCNA_03557 0.64 +0.3 3,713,547 - CCNA_03557 0.64 -0.8 3,713,578 + CCNA_03557 0.68 +0.3 3,713,701 + CCNA_03557 0.85 -0.1 3,713,706 + CCNA_03557 0.86 -0.6 3,713,869 - +0.1 3,713,881 + -1.0 3,713,991 - +0.4 3,713,991 - +0.0 3,714,016 + -0.6
Or see this region's nucleotide sequence