Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03544 and CCNA_03545 are separated by 120 nucleotides CCNA_03545 and CCNA_03546 are separated by 47 nucleotides CCNA_03546 and CCNA_03547 are separated by 16 nucleotides
CCNA_03544: CCNA_03544 - nicotinate-nucleotide adenylyltransferase, at 3,701,306 to 3,701,956
_03544
CCNA_03545: CCNA_03545 - iojap protein family, at 3,702,077 to 3,702,508
_03545
CCNA_03546: CCNA_03546 - rRNA large subunit methyltransferase, at 3,702,556 to 3,703,077
_03546
CCNA_03547: CCNA_03547 - peptidoglycan-specific endopeptidase, M23 family, at 3,703,094 to 3,704,149
_03547
Position (kb)
3702
3703
3704 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3701.950 kb on + strand at 3701.955 kb on + strand at 3701.960 kb on + strand at 3702.001 kb on + strand at 3702.012 kb on + strand at 3702.031 kb on - strand at 3702.047 kb on + strand at 3702.055 kb on - strand at 3702.066 kb on + strand at 3702.075 kb on - strand at 3702.215 kb on + strand, within CCNA_03545 at 3702.539 kb on + strand at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.675 kb on + strand, within CCNA_03546 at 3702.678 kb on - strand, within CCNA_03546 at 3702.697 kb on + strand, within CCNA_03546 at 3702.710 kb on + strand, within CCNA_03546 at 3702.712 kb on - strand, within CCNA_03546 at 3702.725 kb on - strand, within CCNA_03546 at 3702.764 kb on - strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.809 kb on + strand, within CCNA_03546 at 3702.811 kb on + strand, within CCNA_03546 at 3702.817 kb on - strand, within CCNA_03546 at 3702.831 kb on + strand, within CCNA_03546 at 3702.839 kb on - strand, within CCNA_03546 at 3702.865 kb on + strand, within CCNA_03546 at 3702.886 kb on + strand, within CCNA_03546 at 3702.904 kb on - strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.987 kb on - strand, within CCNA_03546 at 3703.005 kb on - strand, within CCNA_03546 at 3703.005 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.034 kb on - strand at 3703.034 kb on - strand at 3703.058 kb on + strand at 3703.058 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.083 kb on + strand at 3703.099 kb on - strand at 3703.159 kb on - strand at 3703.266 kb on + strand, within CCNA_03547 at 3703.320 kb on + strand, within CCNA_03547 at 3703.651 kb on - strand, within CCNA_03547 at 3703.675 kb on + strand, within CCNA_03547 at 3703.710 kb on - strand, within CCNA_03547 at 3703.754 kb on + strand, within CCNA_03547 at 3703.759 kb on - strand, within CCNA_03547 at 3703.848 kb on + strand, within CCNA_03547 at 3703.940 kb on + strand, within CCNA_03547 at 3704.019 kb on + strand, within CCNA_03547 at 3704.048 kb on + strand at 3704.056 kb on + strand at 3704.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,701,950 + +0.4 3,701,955 + +0.1 3,701,960 + +0.0 3,702,001 + +0.3 3,702,012 + -0.8 3,702,031 - +0.5 3,702,047 + +0.2 3,702,055 - +0.1 3,702,066 + -0.1 3,702,075 - +0.1 3,702,215 + CCNA_03545 0.32 -1.4 3,702,539 + -0.2 3,702,670 + CCNA_03546 0.22 +0.2 3,702,670 + CCNA_03546 0.22 -0.0 3,702,670 + CCNA_03546 0.22 +0.4 3,702,670 + CCNA_03546 0.22 -0.9 3,702,670 + CCNA_03546 0.22 +0.4 3,702,670 + CCNA_03546 0.22 -0.3 3,702,670 + CCNA_03546 0.22 -0.2 3,702,675 + CCNA_03546 0.23 -0.5 3,702,678 - CCNA_03546 0.23 -0.5 3,702,697 + CCNA_03546 0.27 -0.1 3,702,710 + CCNA_03546 0.30 +1.1 3,702,712 - CCNA_03546 0.30 +0.5 3,702,725 - CCNA_03546 0.32 -0.9 3,702,764 - CCNA_03546 0.40 -1.0 3,702,793 + CCNA_03546 0.45 -0.1 3,702,793 + CCNA_03546 0.45 -0.4 3,702,793 + CCNA_03546 0.45 -0.4 3,702,793 + CCNA_03546 0.45 -0.4 3,702,793 + CCNA_03546 0.45 +1.2 3,702,809 + CCNA_03546 0.48 -0.8 3,702,811 + CCNA_03546 0.49 +0.5 3,702,817 - CCNA_03546 0.50 +0.1 3,702,831 + CCNA_03546 0.53 +0.5 3,702,839 - CCNA_03546 0.54 -0.5 3,702,865 + CCNA_03546 0.59 +0.8 3,702,886 + CCNA_03546 0.63 +0.4 3,702,904 - CCNA_03546 0.67 -0.1 3,702,979 + CCNA_03546 0.81 +0.6 3,702,979 + CCNA_03546 0.81 +0.9 3,702,979 + CCNA_03546 0.81 -0.5 3,702,987 - CCNA_03546 0.83 +0.2 3,703,005 - CCNA_03546 0.86 -1.5 3,703,005 - CCNA_03546 0.86 -0.9 3,703,010 - CCNA_03546 0.87 +0.8 3,703,010 - CCNA_03546 0.87 +0.1 3,703,010 - CCNA_03546 0.87 -0.1 3,703,034 - +1.0 3,703,034 - +0.1 3,703,058 + +0.9 3,703,058 + -0.8 3,703,060 + +1.0 3,703,060 + +0.3 3,703,060 + +0.0 3,703,060 + +0.0 3,703,083 + -1.4 3,703,099 - -1.5 3,703,159 - +0.1 3,703,266 + CCNA_03547 0.16 -2.5 3,703,320 + CCNA_03547 0.21 -0.3 3,703,651 - CCNA_03547 0.53 -2.4 3,703,675 + CCNA_03547 0.55 -0.5 3,703,710 - CCNA_03547 0.58 -0.0 3,703,754 + CCNA_03547 0.62 +1.1 3,703,759 - CCNA_03547 0.63 -0.7 3,703,848 + CCNA_03547 0.71 -0.9 3,703,940 + CCNA_03547 0.80 +0.5 3,704,019 + CCNA_03547 0.88 +0.1 3,704,048 + +1.8 3,704,056 + -0.1 3,704,057 + -1.4
Or see this region's nucleotide sequence