Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03538

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Dimethyl Sulfoxide 0.4 %
3,695,151	+		CCNA_03536	0.11	-0.4
3,695,214	+		CCNA_03536	0.21	-0.2
3,695,234	+		CCNA_03536	0.24	+0.6
3,695,284	+		CCNA_03536	0.31	-0.4
3,695,288	+		CCNA_03536	0.32	+0.2
3,695,324	+		CCNA_03536	0.37	-0.6
3,695,350	-		CCNA_03536	0.41	-2.4
3,695,351	-		CCNA_03536	0.41	-0.5
3,695,423	-		CCNA_03536	0.52	-2.8
3,695,483	+		CCNA_03536	0.61	-0.9
3,695,491	-		CCNA_03536	0.63	-0.7
3,695,561	+		CCNA_03536	0.73	+0.1
3,695,583	+		CCNA_03536	0.77	-0.1
3,695,601	-		CCNA_03536	0.79	+0.3
3,695,601	-		CCNA_03536	0.79	-1.6
3,695,601	-		CCNA_03536	0.79	-1.9
3,695,603	-		CCNA_03536	0.80	-2.4
3,695,611	-		CCNA_03536	0.81	-0.9
3,695,665	+		CCNA_03536	0.89	+0.7
3,695,665	+		CCNA_03536	0.89	-0.4
3,695,713	+				+0.7
3,695,804	+				-1.5
3,695,817	+				+0.1
3,695,871	+		CCNA_03537	0.25	+0.5
3,695,887	+		CCNA_03537	0.30	-0.1
3,695,895	-		CCNA_03537	0.32	+0.5
3,695,976	+		CCNA_03537	0.55	+0.2
3,695,984	-		CCNA_03537	0.57	-0.8
3,695,998	-		CCNA_03537	0.61	+0.1
3,695,999	-		CCNA_03537	0.61	-0.8
3,696,021	+		CCNA_03537	0.68	-0.2
3,696,178	-				-0.5
3,696,191	+				-1.8
3,696,225	+				+0.3
3,696,225	+				-1.7
3,696,225	+				+0.4
3,696,234	-				-0.5
3,696,239	-		CCNA_03538	0.10	-1.7
3,696,254	+		CCNA_03538	0.12	-1.8
3,696,271	+		CCNA_03538	0.14	-0.3
3,696,281	-		CCNA_03538	0.15	+0.1
3,696,301	+		CCNA_03538	0.17	+0.4
3,696,377	+		CCNA_03538	0.26	+1.3
3,696,389	+		CCNA_03538	0.27	+1.5
3,696,390	+		CCNA_03538	0.28	-1.0
3,696,408	+		CCNA_03538	0.30	+1.0
3,696,408	+		CCNA_03538	0.30	+0.2
3,696,408	+		CCNA_03538	0.30	+0.4
3,696,408	+		CCNA_03538	0.30	-0.1
3,696,416	-		CCNA_03538	0.31	-1.7
3,696,416	-		CCNA_03538	0.31	+0.1
3,696,416	-		CCNA_03538	0.31	+0.3
3,696,416	-		CCNA_03538	0.31	-0.9
3,696,475	+		CCNA_03538	0.37	-1.4
3,696,494	+		CCNA_03538	0.40	+0.7
3,696,524	+		CCNA_03538	0.43	+0.7
3,696,542	+		CCNA_03538	0.45	+0.2
3,696,593	-		CCNA_03538	0.51	+0.1
3,696,593	-		CCNA_03538	0.51	-0.3
3,696,658	-		CCNA_03538	0.58	-1.3
3,696,769	-		CCNA_03538	0.71	-0.1
3,696,793	-		CCNA_03538	0.74	-1.5
3,696,888	-		CCNA_03538	0.85	-1.3
3,696,893	-		CCNA_03538	0.85	-0.3
3,696,931	+		CCNA_03538	0.90	-0.9
3,696,931	+		CCNA_03538	0.90	-1.2
3,696,959	+				+0.7
3,697,003	-				-0.5
3,697,026	+				-0.3
3,697,027	+				-1.8
3,697,027	+				-0.1
3,697,027	+				+0.2
3,697,034	-				-0.1
3,697,035	-				-0.5
3,697,035	-				+0.3
3,697,035	-				-0.5
3,697,052	+				+0.8
3,697,052	+				+2.7
3,697,054	-				-0.1
3,697,059	-				-0.7
3,697,085	-				+0.5
3,697,139	-		CCNA_03539	0.25	+0.2
3,697,150	+		CCNA_03539	0.28	-0.3
3,697,180	-		CCNA_03539	0.36	-0.4
3,697,181	+		CCNA_03539	0.36	+1.8
3,697,181	+		CCNA_03539	0.36	+0.1
3,697,181	+		CCNA_03539	0.36	-0.3
3,697,189	-		CCNA_03539	0.39	-0.8
3,697,189	-		CCNA_03539	0.39	-2.2
3,697,225	+		CCNA_03539	0.48	+0.3
3,697,225	+		CCNA_03539	0.48	+0.7
3,697,272	-		CCNA_03539	0.61	-1.5
3,697,275	+		CCNA_03539	0.62	-0.2
3,697,275	+		CCNA_03539	0.62	-0.5
3,697,278	-		CCNA_03539	0.63	-0.4
3,697,283	+		CCNA_03539	0.64	-1.4
3,697,283	+		CCNA_03539	0.64	-1.4
3,697,283	-		CCNA_03539	0.64	-0.1
3,697,301	-		CCNA_03539	0.69	+0.4
3,697,320	-		CCNA_03539	0.75	-0.5
3,697,352	+		CCNA_03539	0.83	+0.0
3,697,365	-		CCNA_03539	0.87	-1.7
3,697,365	-		CCNA_03539	0.87	-0.7
3,697,367	+		CCNA_03539	0.88	+0.8
3,697,375	-				-0.0
3,697,375	-				-0.4
3,697,383	-				-1.6
3,697,383	-				-0.5
3,697,384	-				-0.9
3,697,453	-				-0.9
3,697,457	+				-0.1
3,697,457	+				-0.0
3,697,457	+				+0.0
3,697,457	+				+0.2
3,697,457	+				+0.1
3,697,479	-		CCNA_03540	0.11	-1.2
3,697,481	+		CCNA_03540	0.11	+1.4
3,697,489	-		CCNA_03540	0.12	-0.3
3,697,509	-		CCNA_03540	0.15	+1.8
3,697,603	+		CCNA_03540	0.30	-0.5
3,697,611	-		CCNA_03540	0.31	+0.3
3,697,611	-		CCNA_03540	0.31	-0.1
3,697,658	+		CCNA_03540	0.38	-0.6
3,697,726	-		CCNA_03540	0.48	+0.2
3,697,726	-		CCNA_03540	0.48	+0.3
3,697,726	-		CCNA_03540	0.48	-0.0
3,697,726	-		CCNA_03540	0.48	-0.7
3,697,749	+		CCNA_03540	0.52	-0.1
3,697,755	-		CCNA_03540	0.53	-0.0
3,697,755	-		CCNA_03540	0.53	+0.4
3,697,757	+		CCNA_03540	0.53	+1.8
3,697,765	-		CCNA_03540	0.54	+1.7
3,697,765	-		CCNA_03540	0.54	-1.0
3,697,765	-		CCNA_03540	0.54	-0.1
3,697,782	+		CCNA_03540	0.57	-0.5
3,697,808	+		CCNA_03540	0.61	-0.6
3,697,811	-		CCNA_03540	0.61	-1.0
3,697,831	+		CCNA_03540	0.64	-0.2
3,697,836	+		CCNA_03540	0.65	+0.4
3,697,844	-		CCNA_03540	0.66	-0.1
3,697,845	-		CCNA_03540	0.67	-0.2
3,697,847	+		CCNA_03540	0.67	-0.0
3,697,853	-		CCNA_03540	0.68	-0.1
3,697,890	+		CCNA_03540	0.73	+0.1
3,697,893	-		CCNA_03540	0.74	-0.1
3,697,893	-		CCNA_03540	0.74	-1.2
3,697,945	+		CCNA_03540	0.82	+0.1
3,697,963	-		CCNA_03540	0.84	-0.9
3,697,968	-		CCNA_03540	0.85	+2.0
3,697,995	+		CCNA_03540	0.89	+0.3