Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03335 and CCNA_03336 overlap by 10 nucleotides CCNA_03336 and CCNA_03337 are separated by 77 nucleotides CCNA_03337 and CCNA_03338 are separated by 196 nucleotides
CCNA_03335: CCNA_03335 - PP-loop family cell cycle control ATPase, at 3,516,491 to 3,517,717
_03335
CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562
_03336
CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206
_03337
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
Position (kb)
3517
3518
3519 Strain fitness (log2 ratio)
-2
-1
0
1 at 3517.685 kb on + strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.703 kb on - strand at 3517.708 kb on - strand at 3517.708 kb on - strand at 3517.753 kb on + strand at 3517.756 kb on - strand at 3517.756 kb on - strand at 3517.767 kb on + strand at 3517.767 kb on + strand at 3517.780 kb on - strand at 3517.797 kb on + strand, within CCNA_03336 at 3517.807 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.840 kb on - strand, within CCNA_03336 at 3517.847 kb on + strand, within CCNA_03336 at 3517.876 kb on + strand, within CCNA_03336 at 3517.925 kb on + strand, within CCNA_03336 at 3517.932 kb on - strand, within CCNA_03336 at 3518.023 kb on - strand, within CCNA_03336 at 3518.031 kb on - strand, within CCNA_03336 at 3518.128 kb on - strand, within CCNA_03336 at 3518.128 kb on - strand, within CCNA_03336 at 3518.135 kb on + strand, within CCNA_03336 at 3518.179 kb on + strand, within CCNA_03336 at 3518.249 kb on + strand, within CCNA_03336 at 3518.249 kb on + strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.267 kb on - strand, within CCNA_03336 at 3518.291 kb on + strand, within CCNA_03336 at 3518.344 kb on - strand, within CCNA_03336 at 3518.381 kb on - strand, within CCNA_03336 at 3518.416 kb on - strand, within CCNA_03336 at 3518.429 kb on + strand, within CCNA_03336 at 3518.535 kb on - strand at 3518.556 kb on - strand at 3518.635 kb on - strand at 3518.635 kb on - strand at 3518.635 kb on - strand at 3518.828 kb on + strand, within CCNA_03337 at 3518.834 kb on - strand, within CCNA_03337 at 3518.908 kb on - strand, within CCNA_03337 at 3518.953 kb on - strand, within CCNA_03337 at 3518.999 kb on - strand, within CCNA_03337 at 3519.004 kb on - strand, within CCNA_03337 at 3519.011 kb on + strand, within CCNA_03337 at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.245 kb on - strand at 3519.252 kb on - strand at 3519.258 kb on + strand at 3519.328 kb on + strand at 3519.329 kb on + strand at 3519.375 kb on + strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.395 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,517,685 + -0.8 3,517,693 - -0.8 3,517,693 - +0.1 3,517,693 - +0.2 3,517,693 - -0.1 3,517,703 - +0.2 3,517,708 - +0.2 3,517,708 - +0.7 3,517,753 + +0.7 3,517,756 - -1.7 3,517,756 - -0.4 3,517,767 + -1.2 3,517,767 + -0.6 3,517,780 - -1.9 3,517,797 + CCNA_03336 0.10 -0.8 3,517,807 + CCNA_03336 0.12 -0.1 3,517,832 + CCNA_03336 0.15 -0.3 3,517,832 + CCNA_03336 0.15 +0.7 3,517,832 + CCNA_03336 0.15 -1.2 3,517,832 + CCNA_03336 0.15 -0.6 3,517,840 - CCNA_03336 0.15 -0.3 3,517,847 + CCNA_03336 0.16 -0.3 3,517,876 + CCNA_03336 0.20 -1.5 3,517,925 + CCNA_03336 0.25 -1.0 3,517,932 - CCNA_03336 0.26 -1.4 3,518,023 - CCNA_03336 0.37 -0.5 3,518,031 - CCNA_03336 0.38 -0.8 3,518,128 - CCNA_03336 0.49 -1.4 3,518,128 - CCNA_03336 0.49 -0.7 3,518,135 + CCNA_03336 0.50 -2.0 3,518,179 + CCNA_03336 0.55 -2.1 3,518,249 + CCNA_03336 0.63 +0.7 3,518,249 + CCNA_03336 0.63 +0.7 3,518,257 - CCNA_03336 0.64 -0.3 3,518,257 - CCNA_03336 0.64 +0.7 3,518,257 - CCNA_03336 0.64 -1.7 3,518,257 - CCNA_03336 0.64 -1.3 3,518,267 - CCNA_03336 0.65 +0.1 3,518,291 + CCNA_03336 0.68 -2.0 3,518,344 - CCNA_03336 0.74 +0.0 3,518,381 - CCNA_03336 0.79 +0.7 3,518,416 - CCNA_03336 0.83 +0.4 3,518,429 + CCNA_03336 0.84 -2.2 3,518,535 - +0.1 3,518,556 - -0.1 3,518,635 - +0.3 3,518,635 - +0.6 3,518,635 - -0.1 3,518,828 + CCNA_03337 0.33 -0.9 3,518,834 - CCNA_03337 0.34 +0.1 3,518,908 - CCNA_03337 0.47 -0.7 3,518,953 - CCNA_03337 0.55 -0.6 3,518,999 - CCNA_03337 0.63 -1.7 3,519,004 - CCNA_03337 0.64 -2.2 3,519,011 + CCNA_03337 0.65 -0.9 3,519,227 + -0.6 3,519,227 + -0.3 3,519,227 + -2.0 3,519,227 + -1.6 3,519,227 + +0.1 3,519,227 + -0.3 3,519,227 + -2.6 3,519,235 - +0.6 3,519,235 - -1.3 3,519,235 - +0.7 3,519,235 - +0.3 3,519,235 - +0.1 3,519,235 - +0.6 3,519,245 - +0.3 3,519,252 - +0.6 3,519,258 + -1.1 3,519,328 + +0.4 3,519,329 + -0.4 3,519,375 + -0.9 3,519,383 - +0.3 3,519,383 - +0.5 3,519,383 - +1.0 3,519,395 + -0.6 3,519,406 + -0.7 3,519,406 + +0.3 3,519,414 - +0.0
Or see this region's nucleotide sequence