Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03312

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03310 and CCNA_03311 are separated by 10 nucleotidesCCNA_03311 and CCNA_R0076 are separated by 98 nucleotidesCCNA_R0076 and CCNA_03312 are separated by 234 nucleotidesCCNA_03312 and CCNA_03313 are separated by 16 nucleotidesCCNA_03313 and CCNA_03314 are separated by 377 nucleotides CCNA_03310: CCNA_03310 - transcription antitermination protein NusG, at 3,486,449 to 3,487,006 _03310 CCNA_03311: CCNA_03311 - protein translocase subunit SecE, at 3,487,017 to 3,487,334 _03311 CCNA_R0076: CCNA_R0076 - tRNA-Trp, at 3,487,433 to 3,487,508 _R0076 CCNA_03312: CCNA_03312 - hypothetical protein, at 3,487,743 to 3,487,922 _03312 CCNA_03313: CCNA_03313 - hypothetical protein, at 3,487,939 to 3,488,355 _03313 CCNA_03314: CCNA_03314 - ferredoxin-NADP reductase, at 3,488,733 to 3,489,665 _03314 Position (kb) 3487 3488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3487.651 kb on + strandat 3487.668 kb on + strandat 3487.668 kb on + strandat 3487.670 kb on + strandat 3487.683 kb on + strandat 3487.683 kb on + strandat 3487.683 kb on + strandat 3487.683 kb on + strandat 3487.686 kb on - strandat 3487.688 kb on + strandat 3487.691 kb on - strandat 3487.693 kb on + strandat 3487.696 kb on - strandat 3487.701 kb on - strandat 3487.751 kb on - strandat 3487.780 kb on + strand, within CCNA_03312at 3487.794 kb on + strand, within CCNA_03312at 3487.794 kb on + strand, within CCNA_03312at 3487.799 kb on + strand, within CCNA_03312at 3487.899 kb on + strand, within CCNA_03312at 3487.899 kb on + strand, within CCNA_03312at 3487.899 kb on + strand, within CCNA_03312at 3487.907 kb on - strandat 3487.918 kb on + strandat 3487.918 kb on + strandat 3487.918 kb on + strandat 3487.925 kb on - strandat 3487.931 kb on - strandat 3487.945 kb on - strandat 3487.954 kb on - strandat 3487.955 kb on + strandat 3488.025 kb on + strand, within CCNA_03313at 3488.033 kb on - strand, within CCNA_03313at 3488.033 kb on - strand, within CCNA_03313at 3488.042 kb on + strand, within CCNA_03313at 3488.042 kb on + strand, within CCNA_03313at 3488.050 kb on - strand, within CCNA_03313at 3488.054 kb on + strand, within CCNA_03313at 3488.064 kb on + strand, within CCNA_03313at 3488.072 kb on - strand, within CCNA_03313at 3488.072 kb on - strand, within CCNA_03313at 3488.072 kb on - strand, within CCNA_03313at 3488.080 kb on + strand, within CCNA_03313at 3488.089 kb on - strand, within CCNA_03313at 3488.089 kb on - strand, within CCNA_03313at 3488.107 kb on - strand, within CCNA_03313at 3488.111 kb on + strand, within CCNA_03313at 3488.118 kb on + strand, within CCNA_03313at 3488.137 kb on - strand, within CCNA_03313at 3488.138 kb on + strand, within CCNA_03313at 3488.183 kb on + strand, within CCNA_03313at 3488.212 kb on + strand, within CCNA_03313at 3488.212 kb on + strand, within CCNA_03313at 3488.213 kb on - strand, within CCNA_03313at 3488.220 kb on - strand, within CCNA_03313at 3488.243 kb on - strand, within CCNA_03313at 3488.264 kb on + strand, within CCNA_03313at 3488.264 kb on + strand, within CCNA_03313at 3488.264 kb on + strand, within CCNA_03313at 3488.272 kb on - strand, within CCNA_03313at 3488.272 kb on - strand, within CCNA_03313at 3488.272 kb on - strand, within CCNA_03313at 3488.272 kb on - strand, within CCNA_03313at 3488.272 kb on - strand, within CCNA_03313at 3488.318 kb on - strandat 3488.399 kb on + strandat 3488.418 kb on - strandat 3488.618 kb on - strandat 3488.628 kb on + strandat 3488.636 kb on - strandat 3488.647 kb on + strandat 3488.647 kb on + strandat 3488.647 kb on + strandat 3488.647 kb on + strandat 3488.647 kb on + strandat 3488.647 kb on + strandat 3488.655 kb on - strandat 3488.655 kb on - strandat 3488.655 kb on - strandat 3488.655 kb on - strandat 3488.655 kb on - strandat 3488.691 kb on + strandat 3488.699 kb on - strandat 3488.699 kb on - strandat 3488.724 kb on + strandat 3488.732 kb on + strandat 3488.740 kb on - strandat 3488.740 kb on - strandat 3488.753 kb on - strandat 3488.763 kb on - strandat 3488.766 kb on + strandat 3488.830 kb on - strand, within CCNA_03314at 3488.832 kb on + strand, within CCNA_03314at 3488.832 kb on + strand, within CCNA_03314

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,487,651 + -1.6
3,487,668 + +1.8
3,487,668 + -0.9
3,487,670 + -0.5
3,487,683 + -0.0
3,487,683 + -0.6
3,487,683 + +0.3
3,487,683 + +0.1
3,487,686 - -0.4
3,487,688 + -0.2
3,487,691 - +0.2
3,487,693 + -0.9
3,487,696 - +0.1
3,487,701 - +1.1
3,487,751 - -0.4
3,487,780 + CCNA_03312 0.21 -0.5
3,487,794 + CCNA_03312 0.28 -0.9
3,487,794 + CCNA_03312 0.28 -1.8
3,487,799 + CCNA_03312 0.31 -0.0
3,487,899 + CCNA_03312 0.87 -2.5
3,487,899 + CCNA_03312 0.87 -0.8
3,487,899 + CCNA_03312 0.87 +0.1
3,487,907 - -0.5
3,487,918 + +0.7
3,487,918 + -0.7
3,487,918 + -1.0
3,487,925 - +0.3
3,487,931 - +0.4
3,487,945 - -0.1
3,487,954 - +0.4
3,487,955 + -0.3
3,488,025 + CCNA_03313 0.21 -0.3
3,488,033 - CCNA_03313 0.23 -0.9
3,488,033 - CCNA_03313 0.23 +1.4
3,488,042 + CCNA_03313 0.25 +0.4
3,488,042 + CCNA_03313 0.25 +0.6
3,488,050 - CCNA_03313 0.27 +0.1
3,488,054 + CCNA_03313 0.28 +0.5
3,488,064 + CCNA_03313 0.30 +0.3
3,488,072 - CCNA_03313 0.32 +0.1
3,488,072 - CCNA_03313 0.32 -0.2
3,488,072 - CCNA_03313 0.32 -0.7
3,488,080 + CCNA_03313 0.34 -0.8
3,488,089 - CCNA_03313 0.36 -1.1
3,488,089 - CCNA_03313 0.36 -0.0
3,488,107 - CCNA_03313 0.40 +0.1
3,488,111 + CCNA_03313 0.41 -2.0
3,488,118 + CCNA_03313 0.43 +0.4
3,488,137 - CCNA_03313 0.47 -0.0
3,488,138 + CCNA_03313 0.48 +0.6
3,488,183 + CCNA_03313 0.59 -1.6
3,488,212 + CCNA_03313 0.65 +1.8
3,488,212 + CCNA_03313 0.65 -1.9
3,488,213 - CCNA_03313 0.66 +0.4
3,488,220 - CCNA_03313 0.67 -0.1
3,488,243 - CCNA_03313 0.73 -0.3
3,488,264 + CCNA_03313 0.78 -2.6
3,488,264 + CCNA_03313 0.78 -2.1
3,488,264 + CCNA_03313 0.78 +0.3
3,488,272 - CCNA_03313 0.80 +0.3
3,488,272 - CCNA_03313 0.80 +0.2
3,488,272 - CCNA_03313 0.80 +0.8
3,488,272 - CCNA_03313 0.80 -1.0
3,488,272 - CCNA_03313 0.80 -0.1
3,488,318 - -0.4
3,488,399 + +0.1
3,488,418 - -0.4
3,488,618 - -0.2
3,488,628 + -1.4
3,488,636 - -0.5
3,488,647 + +0.6
3,488,647 + +0.1
3,488,647 + +1.0
3,488,647 + +0.0
3,488,647 + +0.3
3,488,647 + +0.1
3,488,655 - -2.5
3,488,655 - -1.5
3,488,655 - -1.4
3,488,655 - -0.1
3,488,655 - -1.6
3,488,691 + +0.8
3,488,699 - +0.3
3,488,699 - -2.3
3,488,724 + +0.4
3,488,732 + +2.8
3,488,740 - +0.4
3,488,740 - -1.5
3,488,753 - -0.4
3,488,763 - -0.5
3,488,766 + +0.3
3,488,830 - CCNA_03314 0.10 -0.9
3,488,832 + CCNA_03314 0.11 +0.3
3,488,832 + CCNA_03314 0.11 +0.2

Or see this region's nucleotide sequence