Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03136

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03135 and CCNA_03136 are separated by 2 nucleotidesCCNA_03136 and CCNA_03137 are separated by 1 nucleotides CCNA_03135: CCNA_03135 - flagellum-specific ATP synthase fliL, at 3,282,810 to 3,284,144 _03135 CCNA_03136: CCNA_03136 - flagellar export protein FliJ, at 3,284,147 to 3,284,566 _03136 CCNA_03137: CCNA_03137 - endo-1,4-beta-xylanase, at 3,284,568 to 3,285,626 _03137 CCNA_03986: CCNA_03986 - hypothetical protein, at 3,285,449 to 3,285,835 _03986 Position (kb) 3284 3285Strain fitness (log2 ratio) -2 -1 0 1at 3283.227 kb on + strand, within CCNA_03135at 3283.233 kb on + strand, within CCNA_03135at 3283.311 kb on - strand, within CCNA_03135at 3283.348 kb on - strand, within CCNA_03135at 3283.409 kb on - strand, within CCNA_03135at 3283.432 kb on + strand, within CCNA_03135at 3283.437 kb on + strand, within CCNA_03135at 3283.437 kb on + strand, within CCNA_03135at 3283.437 kb on + strand, within CCNA_03135at 3283.445 kb on - strand, within CCNA_03135at 3283.482 kb on + strand, within CCNA_03135at 3283.490 kb on - strand, within CCNA_03135at 3283.549 kb on + strand, within CCNA_03135at 3283.552 kb on - strand, within CCNA_03135at 3283.596 kb on - strand, within CCNA_03135at 3283.608 kb on + strand, within CCNA_03135at 3283.640 kb on + strand, within CCNA_03135at 3283.640 kb on + strand, within CCNA_03135at 3283.648 kb on - strand, within CCNA_03135at 3283.656 kb on + strand, within CCNA_03135at 3283.670 kb on + strand, within CCNA_03135at 3283.708 kb on + strand, within CCNA_03135at 3283.748 kb on - strand, within CCNA_03135at 3283.971 kb on - strand, within CCNA_03135at 3284.076 kb on - strandat 3284.127 kb on - strandat 3284.151 kb on - strandat 3284.374 kb on + strand, within CCNA_03136at 3284.398 kb on + strand, within CCNA_03136at 3284.425 kb on + strand, within CCNA_03136at 3284.425 kb on + strand, within CCNA_03136at 3284.425 kb on + strand, within CCNA_03136at 3284.473 kb on + strand, within CCNA_03136at 3284.473 kb on + strand, within CCNA_03136at 3284.481 kb on - strand, within CCNA_03136at 3284.481 kb on - strand, within CCNA_03136at 3284.537 kb on - strandat 3284.605 kb on + strandat 3284.607 kb on - strandat 3284.613 kb on - strandat 3284.634 kb on + strandat 3284.642 kb on - strandat 3284.658 kb on - strandat 3284.661 kb on + strandat 3284.661 kb on + strandat 3284.667 kb on - strandat 3284.685 kb on - strand, within CCNA_03137at 3284.704 kb on + strand, within CCNA_03137at 3284.731 kb on + strand, within CCNA_03137at 3284.754 kb on - strand, within CCNA_03137at 3284.762 kb on + strand, within CCNA_03137at 3284.770 kb on - strand, within CCNA_03137at 3284.824 kb on - strand, within CCNA_03137at 3284.824 kb on - strand, within CCNA_03137at 3284.831 kb on + strand, within CCNA_03137at 3284.881 kb on + strand, within CCNA_03137at 3284.886 kb on + strand, within CCNA_03137at 3284.886 kb on + strand, within CCNA_03137at 3284.886 kb on + strand, within CCNA_03137at 3284.886 kb on + strand, within CCNA_03137at 3284.889 kb on - strand, within CCNA_03137at 3284.891 kb on + strand, within CCNA_03137at 3284.894 kb on - strand, within CCNA_03137at 3284.896 kb on + strand, within CCNA_03137at 3284.900 kb on - strand, within CCNA_03137at 3284.900 kb on - strand, within CCNA_03137at 3284.902 kb on + strand, within CCNA_03137at 3284.906 kb on + strand, within CCNA_03137at 3284.910 kb on - strand, within CCNA_03137at 3284.914 kb on - strand, within CCNA_03137at 3284.914 kb on - strand, within CCNA_03137at 3284.934 kb on + strand, within CCNA_03137at 3284.939 kb on + strand, within CCNA_03137at 3284.947 kb on - strand, within CCNA_03137at 3285.022 kb on + strand, within CCNA_03137at 3285.057 kb on - strand, within CCNA_03137at 3285.059 kb on + strand, within CCNA_03137at 3285.062 kb on - strand, within CCNA_03137at 3285.113 kb on - strand, within CCNA_03137at 3285.129 kb on - strand, within CCNA_03137at 3285.266 kb on - strand, within CCNA_03137at 3285.281 kb on - strand, within CCNA_03137at 3285.286 kb on - strand, within CCNA_03137at 3285.286 kb on - strand, within CCNA_03137at 3285.323 kb on + strand, within CCNA_03137at 3285.323 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.328 kb on + strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.336 kb on - strand, within CCNA_03137at 3285.367 kb on - strand, within CCNA_03137at 3285.388 kb on - strand, within CCNA_03137at 3285.419 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.446 kb on + strand, within CCNA_03137at 3285.451 kb on + strandat 3285.454 kb on - strandat 3285.459 kb on - strandat 3285.459 kb on - strandat 3285.488 kb on + strandat 3285.552 kb on - strandat 3285.554 kb on + strandat 3285.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,283,227 + CCNA_03135 0.31 -1.1
3,283,233 + CCNA_03135 0.32 -0.1
3,283,311 - CCNA_03135 0.38 -0.3
3,283,348 - CCNA_03135 0.40 -0.7
3,283,409 - CCNA_03135 0.45 -1.0
3,283,432 + CCNA_03135 0.47 -1.1
3,283,437 + CCNA_03135 0.47 -1.3
3,283,437 + CCNA_03135 0.47 -1.7
3,283,437 + CCNA_03135 0.47 +0.7
3,283,445 - CCNA_03135 0.48 +0.7
3,283,482 + CCNA_03135 0.50 +0.5
3,283,490 - CCNA_03135 0.51 +0.4
3,283,549 + CCNA_03135 0.55 -1.9
3,283,552 - CCNA_03135 0.56 +0.2
3,283,596 - CCNA_03135 0.59 -1.3
3,283,608 + CCNA_03135 0.60 +0.2
3,283,640 + CCNA_03135 0.62 -2.3
3,283,640 + CCNA_03135 0.62 -2.3
3,283,648 - CCNA_03135 0.63 -1.6
3,283,656 + CCNA_03135 0.63 +0.9
3,283,670 + CCNA_03135 0.64 -2.3
3,283,708 + CCNA_03135 0.67 -1.3
3,283,748 - CCNA_03135 0.70 +0.4
3,283,971 - CCNA_03135 0.87 -0.7
3,284,076 - -0.3
3,284,127 - -1.8
3,284,151 - -1.2
3,284,374 + CCNA_03136 0.54 -0.9
3,284,398 + CCNA_03136 0.60 -0.0
3,284,425 + CCNA_03136 0.66 +0.3
3,284,425 + CCNA_03136 0.66 -1.6
3,284,425 + CCNA_03136 0.66 -0.7
3,284,473 + CCNA_03136 0.78 -0.6
3,284,473 + CCNA_03136 0.78 -0.5
3,284,481 - CCNA_03136 0.80 -1.7
3,284,481 - CCNA_03136 0.80 +0.9
3,284,537 - -0.5
3,284,605 + +0.5
3,284,607 - +1.3
3,284,613 - -0.3
3,284,634 + -0.3
3,284,642 - -0.6
3,284,658 - -0.3
3,284,661 + +0.9
3,284,661 + +0.1
3,284,667 - -0.0
3,284,685 - CCNA_03137 0.11 -1.4
3,284,704 + CCNA_03137 0.13 +0.7
3,284,731 + CCNA_03137 0.15 +0.2
3,284,754 - CCNA_03137 0.18 +0.5
3,284,762 + CCNA_03137 0.18 +1.3
3,284,770 - CCNA_03137 0.19 -0.2
3,284,824 - CCNA_03137 0.24 -0.1
3,284,824 - CCNA_03137 0.24 -0.5
3,284,831 + CCNA_03137 0.25 +0.3
3,284,881 + CCNA_03137 0.30 +0.2
3,284,886 + CCNA_03137 0.30 +0.3
3,284,886 + CCNA_03137 0.30 +0.3
3,284,886 + CCNA_03137 0.30 -0.5
3,284,886 + CCNA_03137 0.30 +0.2
3,284,889 - CCNA_03137 0.30 +0.6
3,284,891 + CCNA_03137 0.31 -0.7
3,284,894 - CCNA_03137 0.31 -1.1
3,284,896 + CCNA_03137 0.31 -0.9
3,284,900 - CCNA_03137 0.31 +0.2
3,284,900 - CCNA_03137 0.31 -0.9
3,284,902 + CCNA_03137 0.32 +0.6
3,284,906 + CCNA_03137 0.32 +0.1
3,284,910 - CCNA_03137 0.32 -0.7
3,284,914 - CCNA_03137 0.33 -1.2
3,284,914 - CCNA_03137 0.33 +0.2
3,284,934 + CCNA_03137 0.35 -0.1
3,284,939 + CCNA_03137 0.35 +0.0
3,284,947 - CCNA_03137 0.36 -0.8
3,285,022 + CCNA_03137 0.43 +0.3
3,285,057 - CCNA_03137 0.46 -0.6
3,285,059 + CCNA_03137 0.46 -0.6
3,285,062 - CCNA_03137 0.47 -1.1
3,285,113 - CCNA_03137 0.51 +0.2
3,285,129 - CCNA_03137 0.53 +0.4
3,285,266 - CCNA_03137 0.66 +0.8
3,285,281 - CCNA_03137 0.67 -0.4
3,285,286 - CCNA_03137 0.68 -0.2
3,285,286 - CCNA_03137 0.68 +0.3
3,285,323 + CCNA_03137 0.71 +0.3
3,285,323 + CCNA_03137 0.71 +0.2
3,285,328 + CCNA_03137 0.72 -1.2
3,285,328 + CCNA_03137 0.72 +1.7
3,285,336 - CCNA_03137 0.73 -0.2
3,285,336 - CCNA_03137 0.73 -1.6
3,285,336 - CCNA_03137 0.73 -0.8
3,285,367 - CCNA_03137 0.75 +0.2
3,285,388 - CCNA_03137 0.77 -0.6
3,285,419 + CCNA_03137 0.80 +0.5
3,285,446 + CCNA_03137 0.83 -0.6
3,285,446 + CCNA_03137 0.83 +0.5
3,285,446 + CCNA_03137 0.83 -0.1
3,285,451 + +0.7
3,285,454 - +0.1
3,285,459 - -0.5
3,285,459 - -0.7
3,285,488 + +0.0
3,285,552 - -0.1
3,285,554 + -0.1
3,285,563 - +1.2

Or see this region's nucleotide sequence