Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03114

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03985 and CCNA_03113 overlap by 32 nucleotidesCCNA_03113 and CCNA_03114 are separated by 78 nucleotidesCCNA_03114 and CCNA_03115 are separated by 32 nucleotides CCNA_03985: CCNA_03985 - hypothetical protein, at 3,263,371 to 3,263,811 _03985 CCNA_03113: CCNA_03113 - membrane-associated phospholipid phosphatase, at 3,263,780 to 3,264,499 _03113 CCNA_03114: CCNA_03114 - hypothetical protein, at 3,264,578 to 3,264,754 _03114 CCNA_03115: CCNA_03115 - cobaltochelatase cobS subunit, at 3,264,787 to 3,265,797 _03115 Position (kb) 3264 3265Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3263.592 kb on + strand, within CCNA_03985at 3263.604 kb on + strand, within CCNA_03985at 3263.612 kb on - strand, within CCNA_03985at 3263.639 kb on + strand, within CCNA_03985at 3263.639 kb on + strand, within CCNA_03985at 3263.651 kb on + strand, within CCNA_03985at 3263.709 kb on - strand, within CCNA_03985at 3263.715 kb on + strand, within CCNA_03985at 3263.723 kb on - strand, within CCNA_03985at 3263.723 kb on - strand, within CCNA_03985at 3263.724 kb on - strand, within CCNA_03985at 3263.737 kb on + strand, within CCNA_03985at 3263.745 kb on - strand, within CCNA_03985at 3263.760 kb on + strand, within CCNA_03985at 3263.761 kb on + strand, within CCNA_03985at 3263.769 kb on - strandat 3263.769 kb on - strandat 3263.838 kb on + strandat 3263.856 kb on - strand, within CCNA_03113at 3263.869 kb on + strand, within CCNA_03113at 3263.894 kb on + strand, within CCNA_03113at 3263.925 kb on + strand, within CCNA_03113at 3263.938 kb on - strand, within CCNA_03113at 3263.940 kb on - strand, within CCNA_03113at 3263.978 kb on - strand, within CCNA_03113at 3264.092 kb on + strand, within CCNA_03113at 3264.100 kb on - strand, within CCNA_03113at 3264.124 kb on + strand, within CCNA_03113at 3264.132 kb on - strand, within CCNA_03113at 3264.139 kb on - strand, within CCNA_03113at 3264.142 kb on + strand, within CCNA_03113at 3264.144 kb on - strand, within CCNA_03113at 3264.147 kb on + strand, within CCNA_03113at 3264.150 kb on - strand, within CCNA_03113at 3264.179 kb on + strand, within CCNA_03113at 3264.226 kb on + strand, within CCNA_03113at 3264.236 kb on + strand, within CCNA_03113at 3264.254 kb on + strand, within CCNA_03113at 3264.254 kb on + strand, within CCNA_03113at 3264.262 kb on - strand, within CCNA_03113at 3264.262 kb on - strand, within CCNA_03113at 3264.262 kb on - strand, within CCNA_03113at 3264.302 kb on + strand, within CCNA_03113at 3264.317 kb on - strand, within CCNA_03113at 3264.334 kb on + strand, within CCNA_03113at 3264.336 kb on + strand, within CCNA_03113at 3264.336 kb on + strand, within CCNA_03113at 3264.342 kb on - strand, within CCNA_03113at 3264.344 kb on - strand, within CCNA_03113at 3264.344 kb on - strand, within CCNA_03113at 3264.352 kb on + strand, within CCNA_03113at 3264.353 kb on + strand, within CCNA_03113at 3264.353 kb on + strand, within CCNA_03113at 3264.360 kb on + strand, within CCNA_03113at 3264.360 kb on - strand, within CCNA_03113at 3264.361 kb on - strand, within CCNA_03113at 3264.367 kb on - strand, within CCNA_03113at 3264.371 kb on + strand, within CCNA_03113at 3264.390 kb on - strand, within CCNA_03113at 3264.412 kb on - strand, within CCNA_03113at 3264.501 kb on - strandat 3264.555 kb on - strandat 3264.595 kb on + strandat 3264.617 kb on + strand, within CCNA_03114at 3264.657 kb on + strand, within CCNA_03114at 3264.657 kb on + strand, within CCNA_03114at 3264.662 kb on + strand, within CCNA_03114at 3264.662 kb on + strand, within CCNA_03114at 3264.704 kb on - strand, within CCNA_03114at 3264.778 kb on + strandat 3264.789 kb on + strandat 3265.191 kb on + strand, within CCNA_03115at 3265.277 kb on + strand, within CCNA_03115at 3265.506 kb on + strand, within CCNA_03115at 3265.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,263,592 + CCNA_03985 0.50 +1.6
3,263,604 + CCNA_03985 0.53 +0.0
3,263,612 - CCNA_03985 0.55 -0.5
3,263,639 + CCNA_03985 0.61 +0.2
3,263,639 + CCNA_03985 0.61 -0.4
3,263,651 + CCNA_03985 0.63 -1.2
3,263,709 - CCNA_03985 0.77 -2.1
3,263,715 + CCNA_03985 0.78 -0.2
3,263,723 - CCNA_03985 0.80 -0.8
3,263,723 - CCNA_03985 0.80 +2.2
3,263,724 - CCNA_03985 0.80 -0.7
3,263,737 + CCNA_03985 0.83 -0.2
3,263,745 - CCNA_03985 0.85 -2.5
3,263,760 + CCNA_03985 0.88 +0.4
3,263,761 + CCNA_03985 0.88 -0.0
3,263,769 - +2.3
3,263,769 - +0.3
3,263,838 + -0.0
3,263,856 - CCNA_03113 0.11 -0.7
3,263,869 + CCNA_03113 0.12 +0.8
3,263,894 + CCNA_03113 0.16 -0.0
3,263,925 + CCNA_03113 0.20 -0.1
3,263,938 - CCNA_03113 0.22 +0.2
3,263,940 - CCNA_03113 0.22 -0.4
3,263,978 - CCNA_03113 0.28 +0.2
3,264,092 + CCNA_03113 0.43 -0.6
3,264,100 - CCNA_03113 0.44 -0.6
3,264,124 + CCNA_03113 0.48 +1.2
3,264,132 - CCNA_03113 0.49 +0.3
3,264,139 - CCNA_03113 0.50 -0.2
3,264,142 + CCNA_03113 0.50 +0.2
3,264,144 - CCNA_03113 0.51 -1.4
3,264,147 + CCNA_03113 0.51 -0.1
3,264,150 - CCNA_03113 0.51 +0.6
3,264,179 + CCNA_03113 0.55 +1.2
3,264,226 + CCNA_03113 0.62 +0.0
3,264,236 + CCNA_03113 0.63 +0.1
3,264,254 + CCNA_03113 0.66 -0.5
3,264,254 + CCNA_03113 0.66 -0.1
3,264,262 - CCNA_03113 0.67 -1.3
3,264,262 - CCNA_03113 0.67 +0.4
3,264,262 - CCNA_03113 0.67 +0.1
3,264,302 + CCNA_03113 0.72 -0.3
3,264,317 - CCNA_03113 0.75 -0.2
3,264,334 + CCNA_03113 0.77 -1.7
3,264,336 + CCNA_03113 0.77 -2.4
3,264,336 + CCNA_03113 0.77 +0.4
3,264,342 - CCNA_03113 0.78 -0.1
3,264,344 - CCNA_03113 0.78 +0.2
3,264,344 - CCNA_03113 0.78 +0.4
3,264,352 + CCNA_03113 0.79 +0.7
3,264,353 + CCNA_03113 0.80 -0.4
3,264,353 + CCNA_03113 0.80 -0.3
3,264,360 + CCNA_03113 0.81 -0.3
3,264,360 - CCNA_03113 0.81 -0.3
3,264,361 - CCNA_03113 0.81 +0.2
3,264,367 - CCNA_03113 0.82 -0.7
3,264,371 + CCNA_03113 0.82 -1.0
3,264,390 - CCNA_03113 0.85 -0.5
3,264,412 - CCNA_03113 0.88 -0.7
3,264,501 - +0.1
3,264,555 - -0.7
3,264,595 + +0.4
3,264,617 + CCNA_03114 0.22 -0.4
3,264,657 + CCNA_03114 0.45 +0.4
3,264,657 + CCNA_03114 0.45 -0.3
3,264,662 + CCNA_03114 0.47 -3.0
3,264,662 + CCNA_03114 0.47 -0.1
3,264,704 - CCNA_03114 0.71 -1.1
3,264,778 + -0.8
3,264,789 + -1.8
3,265,191 + CCNA_03115 0.40 +0.4
3,265,277 + CCNA_03115 0.48 -0.7
3,265,506 + CCNA_03115 0.71 -0.4
3,265,698 + -1.7

Or see this region's nucleotide sequence