Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02940 and CCNA_02941 are separated by 154 nucleotides CCNA_02941 and CCNA_02942 are separated by 113 nucleotides
CCNA_02940: CCNA_02940 - methyl-accepting chemotaxis protein, at 3,099,784 to 3,101,388
_02940
CCNA_02941: CCNA_02941 - transcription elongation factor greA, at 3,101,543 to 3,102,016
_02941
CCNA_02942: CCNA_02942 - nucleoside-diphosphate-sugar epimerase, at 3,102,130 to 3,103,299
_02942
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-2
-1
0
1 at 3100.544 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.558 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.566 kb on - strand, within CCNA_02940 at 3100.614 kb on + strand, within CCNA_02940 at 3100.622 kb on - strand, within CCNA_02940 at 3100.642 kb on - strand, within CCNA_02940 at 3100.647 kb on - strand, within CCNA_02940 at 3100.691 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.701 kb on + strand, within CCNA_02940 at 3100.705 kb on - strand, within CCNA_02940 at 3100.851 kb on - strand, within CCNA_02940 at 3100.873 kb on - strand, within CCNA_02940 at 3100.924 kb on - strand, within CCNA_02940 at 3101.008 kb on + strand, within CCNA_02940 at 3101.009 kb on - strand, within CCNA_02940 at 3101.045 kb on + strand, within CCNA_02940 at 3101.068 kb on + strand, within CCNA_02940 at 3101.085 kb on - strand, within CCNA_02940 at 3101.089 kb on - strand, within CCNA_02940 at 3101.117 kb on + strand, within CCNA_02940 at 3101.155 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.206 kb on + strand, within CCNA_02940 at 3101.214 kb on + strand, within CCNA_02940 at 3101.219 kb on - strand, within CCNA_02940 at 3101.231 kb on + strand at 3101.255 kb on + strand at 3101.266 kb on + strand at 3101.274 kb on - strand at 3101.274 kb on - strand at 3101.295 kb on - strand at 3101.317 kb on - strand at 3101.365 kb on - strand at 3101.383 kb on + strand at 3101.400 kb on + strand at 3101.427 kb on + strand at 3101.434 kb on - strand at 3101.761 kb on + strand, within CCNA_02941 at 3101.779 kb on + strand, within CCNA_02941 at 3102.059 kb on + strand at 3102.297 kb on - strand, within CCNA_02942 at 3102.301 kb on + strand, within CCNA_02942 at 3102.306 kb on + strand, within CCNA_02942 at 3102.358 kb on + strand, within CCNA_02942 at 3102.386 kb on + strand, within CCNA_02942 at 3102.391 kb on + strand, within CCNA_02942 at 3102.418 kb on + strand, within CCNA_02942 at 3102.444 kb on + strand, within CCNA_02942 at 3102.530 kb on + strand, within CCNA_02942 at 3102.584 kb on + strand, within CCNA_02942 at 3102.620 kb on - strand, within CCNA_02942 at 3102.633 kb on + strand, within CCNA_02942 at 3102.681 kb on + strand, within CCNA_02942 at 3102.681 kb on + strand, within CCNA_02942 at 3102.688 kb on + strand, within CCNA_02942 at 3102.791 kb on + strand, within CCNA_02942 at 3102.801 kb on - strand, within CCNA_02942 at 3102.837 kb on + strand, within CCNA_02942 at 3102.862 kb on + strand, within CCNA_02942 at 3102.986 kb on + strand, within CCNA_02942
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,100,544 - CCNA_02940 0.47 -0.6 3,100,546 - CCNA_02940 0.47 +0.8 3,100,546 - CCNA_02940 0.47 +0.3 3,100,558 + CCNA_02940 0.48 +0.2 3,100,560 + CCNA_02940 0.48 -0.0 3,100,560 + CCNA_02940 0.48 +0.1 3,100,560 + CCNA_02940 0.48 +0.6 3,100,566 - CCNA_02940 0.49 -0.1 3,100,614 + CCNA_02940 0.52 +0.6 3,100,622 - CCNA_02940 0.52 -1.8 3,100,642 - CCNA_02940 0.53 +0.2 3,100,647 - CCNA_02940 0.54 -0.9 3,100,691 + CCNA_02940 0.57 -0.2 3,100,697 + CCNA_02940 0.57 +0.4 3,100,697 + CCNA_02940 0.57 -0.1 3,100,697 + CCNA_02940 0.57 +0.1 3,100,701 + CCNA_02940 0.57 +0.1 3,100,705 - CCNA_02940 0.57 -1.8 3,100,851 - CCNA_02940 0.66 +0.8 3,100,873 - CCNA_02940 0.68 -0.0 3,100,924 - CCNA_02940 0.71 +0.0 3,101,008 + CCNA_02940 0.76 -0.0 3,101,009 - CCNA_02940 0.76 +0.1 3,101,045 + CCNA_02940 0.79 +0.6 3,101,068 + CCNA_02940 0.80 -0.1 3,101,085 - CCNA_02940 0.81 -0.1 3,101,089 - CCNA_02940 0.81 -0.1 3,101,117 + CCNA_02940 0.83 +1.4 3,101,155 + CCNA_02940 0.85 +0.6 3,101,193 + CCNA_02940 0.88 +0.3 3,101,193 + CCNA_02940 0.88 +1.4 3,101,206 + CCNA_02940 0.89 +0.1 3,101,214 + CCNA_02940 0.89 -0.2 3,101,219 - CCNA_02940 0.89 +0.2 3,101,231 + +1.3 3,101,255 + +0.9 3,101,266 + +1.6 3,101,274 - +0.3 3,101,274 - -0.1 3,101,295 - +1.3 3,101,317 - +1.1 3,101,365 - -1.2 3,101,383 + +0.2 3,101,400 + -1.5 3,101,427 + +0.8 3,101,434 - -0.1 3,101,761 + CCNA_02941 0.46 -2.3 3,101,779 + CCNA_02941 0.50 -2.1 3,102,059 + -1.7 3,102,297 - CCNA_02942 0.14 -1.8 3,102,301 + CCNA_02942 0.15 -0.4 3,102,306 + CCNA_02942 0.15 -0.5 3,102,358 + CCNA_02942 0.19 -0.0 3,102,386 + CCNA_02942 0.22 +0.5 3,102,391 + CCNA_02942 0.22 +0.1 3,102,418 + CCNA_02942 0.25 -0.9 3,102,444 + CCNA_02942 0.27 -0.0 3,102,530 + CCNA_02942 0.34 -2.2 3,102,584 + CCNA_02942 0.39 -0.2 3,102,620 - CCNA_02942 0.42 -0.5 3,102,633 + CCNA_02942 0.43 +0.8 3,102,681 + CCNA_02942 0.47 +1.5 3,102,681 + CCNA_02942 0.47 -1.7 3,102,688 + CCNA_02942 0.48 -2.7 3,102,791 + CCNA_02942 0.56 +0.5 3,102,801 - CCNA_02942 0.57 -0.2 3,102,837 + CCNA_02942 0.60 +0.5 3,102,862 + CCNA_02942 0.63 -1.0 3,102,986 + CCNA_02942 0.73 +0.2
Or see this region's nucleotide sequence